Wakefield, Matthew J.

Gene ontology analysis for RNA-seq: accounting for selection bias

Young, M. D., Wakefield, M. J., Smyth, G. K., & Oshlack, A. (2010) · Genome Biology

Bioinformatics and Genomic NetworksGenomics and Phylogenetic Studies

Cited by 7,107

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

Broad Institute Genome Sequencing Platform, Mikkelsen, T. S., Broad Institute Whole Genome Assembly Team, Wakefield, M. J., Aken, B., Amemiya, C. T., Chang, J. L., Duke, S., Garber, M., Gentles, A. J., et al. (2007) · Nature

Chromosomal and Genetic VariationsGenomics and Phylogenetic Studies

Cited by 711

Transcript length bias in RNA-seq data confounds systems biology

Oshlack, A., & Wakefield, M. J. (2009) · Biology Direct

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 497

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Gentles, A. J., Wakefield, M. J., Kohany, O., Gu, W., Batzer, M. A., Pollock, D. D., & Jurka, J. (2007) · Genome Research

Chromosomal and Genetic VariationsEvolution and Paleontology Studies

Cited by 156

The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals

Hore, T. A., Koina, E., Wakefield, M. J., & Marshall Graves, J. A. (2007) · Chromosome Research

Genetic and Clinical Aspects of Sex Determination and Chromosomal AbnormalitiesChromosomal and Genetic Variations

Cited by 107

MaveDB 2024: a curated community database with over seven million variant effects from multiplexed functional assays

Rubin, A. F., Stone, J., Bianchi, A. H., Capodanno, B. J., Da, E. Y., Dias, M., Esposito, D., Frazer, J., Fu, Y., Grindstaff, S. B., et al. (2025) · Genome Biology

Genomics and Rare DiseasesCRISPR and Genetic Engineering

Cited by 80

RNA-seq of isolated chromaffin cells highlights the role of sex-linked and imprinted genes in adrenal medulla development

Chan, W. H., Komada, M., Fukushima, T., Southard-Smith, E. M., Anderson, C. R., & Wakefield, M. J. (2019) · Scientific Reports

Developmental Biology and Gene RegulationGenetic Syndromes and Imprinting

Cited by 24