Haghverdi, Laleh

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

Haghverdi, L., Lun, A. T. L., Morgan, M. D., & Marioni, J. C. (2018) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,416

Diffusion pseudotime robustly reconstructs lineage branching

Haghverdi, L., Büttner, M., Wolf, F. A., Buettner, F., & Theis, F. J. (2016) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 1,385

Diffusion maps for high-dimensional single-cell analysis of differentiation data

Haghverdi, L., Buettner, F., & Theis, F. J. (2015) · Bioinformatics

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 649

destiny : diffusion maps for large-scale single-cell data in R

Angerer, P., Haghverdi, L., Büttner, M., Theis, F. J., Marr, C., & Buettner, F. (2016) · Bioinformatics

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 640

Decoding the regulatory network of early blood development from single-cell gene expression measurements

Moignard, V., Woodhouse, S., Haghverdi, L., Lilly, A. J., Tanaka, Y., Wilkinson, A. C., Buettner, F., Macaulay, I. C., Jawaid, W., Diamanti, E., et al. (2015) · Nature Biotechnology

Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomics

Cited by 380

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

Ocone, A., Haghverdi, L., Mueller, N. S., & Theis, F. J. (2015) · Bioinformatics

Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomics

Cited by 155

Bone marrow breakout lesions act as key sites for tumor-immune cell diversification in multiple myeloma

Lutz, R., Poos, A. M., Solé-Boldo, L., John, L., Wagner, J., Prokoph, N., Baertsch, M. A., Vonficht, D., Palit, S., Brobeil, A., et al. (2025) · Science Immunology

Multiple Myeloma Research and TreatmentsBone Tumor Diagnosis and Treatments

Cited by 25