Standley, Daron M.

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 46,209

The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection

Satoh, T., Takeuchi, O., Vandenbon, A., Yasuda, K., Tanaka, Y., Kumagai, Y., Miyake, T., Matsushita, K., Okazaki, T., Saitoh, T., et al. (2010) · Nature Immunology

Immune cells in cancerParasites and Host Interactions

Cited by 1,156

Regnase-1 and Roquin Regulate a Common Element in Inflammatory mRNAs by Spatiotemporally Distinct Mechanisms

Mino, T., Murakawa, Y., Fukao, A., Vandenbon, A., Wessels, H.-H., Ori, D., Uehata, T., Tartey, S., Akira, S., Suzuki, Y., et al. (2015) · Cell

RNA Research and SplicingRNA regulation and disease

Cited by 390

Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota

Kawamoto, S., Uemura, K., Hori, N., Takayasu, L., Konishi, Y., Katoh, K., Matsumoto, T., Suzuki, M., Sakai, Y., Matsudaira, T., et al. (2023) · Nature Cell Biology

Gut microbiota and healthGenetics, Aging, and Longevity in Model Organisms

Cited by 91

Structural basis for the assembly of the Ragulator-Rag GTPase complex

Yonehara, R., Nada, S., Nakai, T., Nakai, M., Kitamura, A., Ogawa, A., Nakatsumi, H., Nakayama, K. I., Li, S., Standley, D. M., et al. (2017) · Nature Communications

PI3K/AKT/mTOR signaling in cancerAutophagy in Disease and Therapy

Cited by 75

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

Shirai, H., Ikeda, K., Yamashita, K., Tsuchiya, Y., Sarmiento, J., Liang, S., Morokata, T., Mizuguchi, K., Higo, J., Standley, D. M., et al. (2014) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 51

Improved antibody-specific epitope prediction using AlphaFold and AbAdapt

Xu, Z., Davila, A., Wiamowski, J., Teraguchi, S., & Standley, D. M. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

vaccines and immunoinformatics approachesProtein Structure and Dynamics

Cited by 4