Mahfouz, Ahmed

Conserved cell types with divergent features in human versus mouse cortex

Hodge, R. D., Bakken, T. E., Miller, J. A., Smith, K. A., Barkan, E. R., Graybuck, L. T., Close, J. L., Long, B., Johansen, N., Penn, O., et al. (2019) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 1,775

Eleven grand challenges in single-cell data science

Lähnemann, D., Köster, J., Szczurek, E., McCarthy, D. J., Hicks, S. C., Robinson, M. D., Vallejos, C. A., Campbell, K. R., Beerenwinkel, N., Mahfouz, A., et al. (2020) · Genome Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 1,327

A comparison of automatic cell identification methods for single-cell RNA sequencing data

Abdelaal, T., Michielsen, L., Cats, D., Hoogduin, D., Mei, H., Reinders, M. J. T., & Mahfouz, A. (2019) · Genome Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 628

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells

Gupta, I., Collier, P. G., Haase, B., Mahfouz, A., Joglekar, A., Floyd, T., Koopmans, F., Barres, B., Smit, A. B., Sloan, S. A., et al. (2018) · Nature Biotechnology

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 343

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

Joglekar, A., Prjibelski, A., Mahfouz, A., Collier, P., Lin, S., Schlusche, A. K., Marrocco, J., Williams, S. R., Haase, B., Hayes, A., et al. (2021) · Nature Communications

RNA Research and SplicingSingle-cell and spatial transcriptomics

Cited by 229

SpaGE: Spatial Gene Enhancement using scRNA-seq

Abdelaal, T., Mourragui, S., Mahfouz, A., & Reinders, M. J. T. (2020) · Nucleic Acids Research

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 207

Potential associations between immune signaling genes, deactivated microglia, and oligodendrocytes and cortical gray matter loss in patients with long-term remitted cushing’s disease

Bauduin, S. E. E. C., den Rooijen, I. L. B., Meijer, M., van der Werff, S. J. A., Keo, A., Dzyubachyk, O., Pereira, A. M., Giltay, E. J., van der Wee, N. J. A., Meijer, O. C., et al. (2021) · Psychoneuroendocrinology

Pituitary Gland Disorders and TreatmentsStress Responses and Cortisol

Cited by 9