Cannoodt, Robrecht

A comparison of single-cell trajectory inference methods

Saelens, W., Cannoodt, R., Todorov, H., & Saeys, Y. (2019) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 1,670

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Van de Sande, B., Flerin, C., Davie, K., De Waegeneer, M., Hulselmans, G., Aibar, S., Seurinck, R., Saelens, W., Cannoodt, R., Rouchon, Q., et al. (2020) · Nature Protocols

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 1,494

The RNA Atlas expands the catalog of human non-coding RNAs

Lorenzi, L., Chiu, H.-S., Avila Cobos, F., Gross, S., Volders, P.-J., Cannoodt, R., Nuytens, J., Vanderheyden, K., Anckaert, J., Lefever, S., et al. (2021) · Nature Biotechnology

Cancer-related molecular mechanisms researchRNA Research and Splicing

Cited by 163

Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Cannoodt, R., Saelens, W., Deconinck, L., & Saeys, Y. (2021) · Nature Communications

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 124

dyngen: a multi-modal simulator for spearheading new single-cell omics analyses

Cannoodt, R., Saelens, W., Deconinck, L., & Saeys, Y. (2020) · Nature Communications

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 124

Multimodal single cell data integration challenge: results and lessons learned

Lance, C., Luecken, M. D., Burkhardt, D. B., Cannoodt, R., Rautenstrauch, P., Laddach, A., Ubingazhibov, A., Cao, Z.-J., Deng, K., Khan, S., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 81

Essential guidelines for computational method benchmarking

Weber, L. M., Saelens, W., Cannoodt, R., Soneson, C., Hapfelmeier, A., Gardner, P. P., Boulesteix, A.-L., Saeys, Y., & Robinson, M. D. (2019) · Genome Biology

Scientific Computing and Data ManagementGenomics and Phylogenetic Studies

Cited by 21