Petras, Daniel

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

Cited by 23,742

Integrative analysis of multimodal mass spectrometry data in MZmine 3

Schmid, R., Heuckeroth, S., Korf, A., Smirnov, A., Myers, O., Dyrlund, T. S., Bushuiev, R., Murray, K. J., Hoffmann, N., Lu, M., et al. (2023) · Nature Biotechnology

Metabolomics and Mass Spectrometry StudiesMass Spectrometry Techniques and Applications

Cited by 1,241

Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra

Dührkop, K., Nothias, L.-F., Fleischauer, M., Reher, R., Ludwig, M., Hoffmann, M. A., Petras, D., Gerwick, W. H., Rousu, J., Dorrestein, P. C., et al. (2021) · Nature Biotechnology

Metabolomics and Mass Spectrometry StudiesMass Spectrometry Techniques and Applications

Cited by 860

Mass spectrometry searches using MASST

Wang, M., Jarmusch, A. K., Vargas, F., Aksenov, A. A., Gauglitz, J. M., Weldon, K., Petras, D., da Silva, R., Quinn, R., Melnik, A. V., et al. (2020) · Nature Biotechnology

Metabolomics and Mass Spectrometry StudiesMass Spectrometry Techniques and Applications

Cited by 281

ReDU: a framework to find and reanalyze public mass spectrometry data

Jarmusch, A. K., Wang, M., Aceves, C. M., Advani, R. S., Aguirre, S., Aksenov, A. A., Aleti, G., Aron, A. T., Bauermeister, A., Bolleddu, S., et al. (2020) · Nature Methods

Metabolomics and Mass Spectrometry StudiesResearch Data Management Practices

Cited by 152

Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut

Behnsen, J., Zhi, H., Aron, A. T., Subramanian, V., Santus, W., Lee, M. H., Gerner, R. R., Petras, D., Liu, J. Z., Green, K. D., et al. (2021) · Nature Communications

Bacterial Genetics and BiotechnologyEscherichia coli research studies

Cited by 101

Native mass spectrometry-based metabolomics identifies metal-binding compounds

Aron, A. T., Petras, D., Schmid, R., Gauglitz, J. M., Büttel, I., Antelo, L., Zhi, H., Nuccio, S.-P., Saak, C. C., Malarney, K. P., et al. (2022) · Nature Chemistry

Mass Spectrometry Techniques and ApplicationsMetabolomics and Mass Spectrometry Studies

Cited by 79

Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products

Vitale, G. A., Geibel, C., Minda, V., Wang, M., Aron, A. T., & Petras, D. (2024) · Natural Product Reports

Metabolomics and Mass Spectrometry StudiesComputational Drug Discovery Methods

Cited by 66

Native metabolomics identifies the rivulariapeptolide family of protease inhibitors

Reher, R., Aron, A. T., Fajtová, P., Stincone, P., Wagner, B., Pérez-Lorente, A. I., Liu, C., Shalom, I. Y. B., Bittremieux, W., Wang, M., et al. (2022) · Nature Communications

Microbial Natural Products and BiosynthesisMetabolomics and Mass Spectrometry Studies

Cited by 53

Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking

von Eckardstein, L., Petras, D., Dang, T., Cociancich, S., Sabri, S., Grätz, S., Kerwat, D., Seidel, M., Pesic, A., Dorrestein, P. C., et al. (2017) · Chemistry – A European Journal

Microbial Natural Products and BiosynthesisAdvanced Synthetic Organic Chemistry

Cited by 36

Cyclo(Pro-Tyr) elicits conserved cellular damage in fungi by targeting the [H+]ATPase Pma1 in plasma membrane domains

Vela-Corcia, D., Hierrezuelo, J., Pérez-Lorente, A. I., Stincone, P., Pakkir Shah, A. K., Grélard, A., Zi-Long, Y., de Vicente, A., Pérez García, A., Bai, L., et al. (2024) · Communications Biology

Microbial Natural Products and BiosynthesisAntimicrobial Peptides and Activities

Cited by 13

Deuterium-Labeled Precursor Feeding Reveals a New p ABA-Containing Meroterpenoid from the Mango Pathogen Xanthomonas citri pv. mangiferaeindicae

Saleh, H., Petras, D., Mainz, A., Kerwat, D., Nalbantsoy, A., Erzurumlu, Y., & Süssmuth, R. D. (2016) · Journal of Natural Products

Microbial Natural Products and BiosynthesisBioactive natural compounds

Cited by 13

Native metabolomics for mass spectrometry-based siderophore discovery.

Yazzie, M. T., Reitz, Z. L., Schmid, R., Petras, D., & Aron, A. T. (2024) · Methods in Enzymology

Metabolomics and Mass Spectrometry StudiesMass Spectrometry Techniques and Applications

Cited by 2