Lopez, Romain

Scrublet: computational identification of cell doublets in single-cell transcriptomic data

Wolock, S. L., Lopez, R., & Klein, A. M. (2018) · Cell Systems

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,758

Scrublet: computational identification of cell doublets in single-cell transcriptomic data

Wolock, S. L., Lopez, R., & Klein, A. M. (2019) · Cell Systems

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,758

Deep generative modeling for single-cell transcriptomics

Lopez, R., Regier, J., Cole, M. B., Jordan, M. I., & Yosef, N. (2018) · Nature Methods

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,530

A Python library for probabilistic analysis of single-cell omics data

Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Valiollah Pour Amiri, V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 789

Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models

Xu, C., Lopez, R., Mehlman, E., Regier, J., Jordan, M. I., & Yosef, N. (2021) · Molecular Systems Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 691

Joint probabilistic modeling of single-cell multi-omic data with totalVI

Gayoso, A., Steier, Z., Lopez, R., Regier, J., Nazor, K. L., Streets, A., & Yosef, N. (2021) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 592

DestVI identifies continuums of cell types in spatial transcriptomics data

Lopez, R., Li, B., Keren-Shaul, H., Boyeau, P., Kedmi, M., Pilzer, D., Jelinski, A., Yofe, I., David, E., Wagner, A., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 276

A joint model of unpaired data from scRNA-seq and spatial transcriptomics for imputing missing gene expression measurements

Lopez, R., Nazaret, A., Langevin, M., Samaran, J., Regier, J., Jordan, M. I., & Yosef, N. (2019) · arXiv

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 105

Enhancing scientific discoveries in molecular biology with deep generative models

Lopez, R., Gayoso, A., & Yosef, N. (2020) · Molecular Systems Biology

Single-cell and spatial transcriptomicsMachine Learning in Bioinformatics

Cited by 82