Marks, Debora S.

Protein design using structure-based residue preferences

Ding, D., Shaw, A., Sinai, S., Rollins, N., Prywes, N., Savage, D. F., Laub, M. T., & Marks, D. S. (2022) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 38

Democratizing protein language model training, sharing and collaboration

Su, J., Li, Z., Tao, T., Han, C., He, Y., Dai, F., Yuan, Q., Gao, Y., Si, T., Zhang, X., et al. (2026) · Nature Biotechnology

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 35

Simultaneous enhancement of multiple functional properties using evolution-informed protein design

Fram, B., Truebridge, I., Su, Y., Riesselman, A. J., Ingraham, J. B., Passera, A., Napier, E., Thadani, N. N., Lim, S., Roberts, K., et al. (2023) · Nature Communications

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 34

Simultaneous enhancement of multiple functional properties using evolution-informed protein design

Fram, B., Su, Y., Truebridge, I., Riesselman, A. J., Ingraham, J. B., Passera, A., Napier, E., Thadani, N. N., Lim, S., Roberts, K., et al. (2024) · Nature Communications

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 34

Mechanical gating of the auditory transduction channel TMC1 involves the fourth and sixth transmembrane helices

Akyuz, N., Karavitaki, K. D., Pan, B., Tamvakologos, P. I., Brock, K. P., Li, Y., Marks, D. S., & Corey, D. P. (2022) · Science Advances

Hearing, Cochlea, Tinnitus, GeneticsIon channel regulation and function

Cited by 30

In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer

Harvey, E. P., Smith, J. S., Hurley, J. D., Granados, A. J., Schmid, E. W., Liang-Lin, J. G., Zhang, H., Meara, E. M., Wren, E. K., Paul, S., et al. (2026) · Nature Communications

Computational Drug Discovery Methodsvaccines and immunoinformatics approaches

Cited by 7