Raj, Arjun

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Khalil, A. M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea Morales, D., Thomas, K., Presser, A., Bernstein, B. E., van Oudenaarden, A., et al. (2009) · Proceedings of the National Academy of Sciences

Cancer-related molecular mechanisms researchGenomics and Chromatin Dynamics

Cited by 2,872

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

Raj, A., & van Oudenaarden, A. (2008) · Cell

Gene Regulatory Network Analysisstochastic dynamics and bifurcation

Cited by 2,593

Imaging individual mRNA molecules using multiple singly labeled probes

Raj, A., van den Bogaard, P., Rifkin, S. A., van Oudenaarden, A., & Tyagi, S. (2008) · Nature Methods

Advanced Fluorescence Microscopy TechniquesMolecular Biology Techniques and Applications

Cited by 2,028

Stochastic mRNA Synthesis in Mammalian Cells

Raj, A., Peskin, C. S., Tranchina, D., Vargas, D. Y., & Tyagi, S. (2006) · PLoS Biology

Gene Regulatory Network Analysisstochastic dynamics and bifurcation

Cited by 1,737

Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance

Shaffer, S. M., Dunagin, M. C., Torborg, S. R., Torre, E. A., Emert, B., Krepler, C., Beqiri, M., Sproesser, K., Brafford, P. A., Xiao, M., et al. (2017) · Nature

Cancer Cells and MetastasisSingle-cell and spatial transcriptomics

Cited by 1,218

Noise in Gene Expression Determines Cell Fate in Bacillus subtilis

Maamar, H., Raj, A., & Dubnau, D. (2007) · Science

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 663

LincRNA-p21 Activates p21 In cis to Promote Polycomb Target Gene Expression and to Enforce the G1/S Checkpoint

Dimitrova, N., Zamudio, J. R., Jong, R. M., Soukup, D., Resnick, R., Sarma, K., Ward, A. J., Raj, A., Lee, J. T., Sharp, P. A., et al. (2014) · Molecular Cell

Cancer-related molecular mechanisms researchCancer-related Molecular Pathways

Cited by 445

Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping

Bartman, C. R., Hsu, S. C., Hsiung, C. C.-S., Raj, A., & Blobel, G. A. (2016) · Molecular Cell

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 345

Tumor-associated B-cells induce tumor heterogeneity and therapy resistance

Somasundaram, R., Zhang, G., Fukunaga-Kalabis, M., Perego, M., Krepler, C., Xu, X., Wagner, C., Hristova, D., Zhang, J., Tian, T., et al. (2017) · Nature Communications

Melanoma and MAPK PathwaysCancer Immunotherapy and Biomarkers

Cited by 151

LADL: light-activated dynamic looping for endogenous gene expression control

Kim, J. H., Rege, M., Valeri, J., Dunagin, M. C., Metzger, A., Titus, K. R., Gilgenast, T. G., Gong, W., Beagan, J. A., Raj, A., et al. (2019) · Nature Methods

CRISPR and Genetic EngineeringGenomics and Chromatin Dynamics

Cited by 135