Taylor, James

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Afgan, E., Baker, D., Batut, B., van den Beek, M., Bouvier, D., Čech, M., Chilton, J., Clements, D., Coraor, N., Grüning, B. A., et al. (2018) · Nucleic Acids Research

Scientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical Research

Cited by 3,662

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

Uritskiy, G. V., DiRuggiero, J., & Taylor, J. (2018) · Microbiome

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 2,642

A comparative encyclopedia of DNA elements in the mouse genome

Yue, F., Cheng, Y., Breschi, A., Vierstra, J., Wu, W., Ryba, T., Sandstrom, R., Ma, Z., Davis, C., Pope, B. D., et al. (2014) · Nature

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 1,781

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

Phillips-Cremins, J. E., Sauria, M. E. G., Sanyal, A., Gerasimova, T. I., Lajoie, B. R., Bell, J. S. K., Ong, C.-T., Hookway, T. A., Guo, C., Sun, Y., et al. (2013) · Cell

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 1,187

Ten Simple Rules for Reproducible Computational Research

Sandve, G. K., Nekrutenko, A., Taylor, J., & Hovig, E. (2013) · PLoS Computational Biology

Scientific Computing and Data ManagementResearch Data Management Practices

Cited by 880

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Mouse ENCODE Consortium, Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., et al. (2012) · Genome Biology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 446

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Wu, W., Cheng, Y., Keller, C. A., Ernst, J., Kumar, S. A., Mishra, T., Morrissey, C., Dorman, C. M., Chen, K.-B., Drautz, D., et al. (2011) · Genome Research

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 118