Kim, Daehwan

HISAT: a fast spliced aligner with low memory requirements

Kim, D., Langmead, B., & Salzberg, S. L. (2015) · Nature Methods

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 24,112

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Kim, D., Paggi, J. M., Park, C., Bennett, C., & Salzberg, S. L. (2019) · Nature Biotechnology

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 15,022

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., & Salzberg, S. L. (2013) · Genome Biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 12,668

Centrifuge: rapid and sensitive classification of metagenomic sequences

Kim, D., Song, L., Breitwieser, F. P., & Salzberg, S. L. (2016) · Genome Research

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 1,438