Bates, Paul A.

Updates to the integrated protein-protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2

Vreven, T., Moal, I. H., Vangone, A., Pierce, B. G., Kastritis, P. L., Torchala, M., Chaleil, R., Jiménez-García, B., Bates, P. A., Fernandez-Recio, J., et al. (2015) · Journal of Molecular Biology

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 424

Blind prediction of homo- and hetero-protein complexes: the CASP13-CAPRI experiment

Lensink, M. F., Brysbaert, G., Nadzirin, N., Velankar, S., Chaleil, R. A. G., Gerguri, T., Bates, P. A., Laine, E., Carbone, A., Grudinin, S., et al. (2019) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 122

Conserved Residues of Human XPG Protein Important for Nuclease Activity and Function in Nucleotide Excision Repair

Constantinou, A., Gunz, D., Evans, E., Lalle, P., Bates, P. A., Wood, R. D., & Clarkson, S. G. (1999) · Journal of Biological Chemistry

DNA Repair MechanismsEnzyme Structure and Function

Cited by 119

Selection of metastasis competent subclones in the tumour interior

Zhao, Y., Fu, X., Lopez, J. I., Rowan, A., Au, L., Fendler, A., Hazell, S., Xu, H., Horswell, S., Shepherd, S. T. C., et al. (2021) · Nature Ecology & Evolution

Cancer Genomics and DiagnosticsCancer Cells and Metastasis

Cited by 95

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

Schmidbaur, H., Kawaguchi, A., Clarence, T., Fu, X., Hoang, O. P., Zimmermann, B., Ritschard, E. A., Weissenbacher, A., Foster, J. S., Nyholm, S. V., et al. (2022) · Nature Communications

Cephalopods and Marine BiologyChromosomal and Genetic Variations

Cited by 66

Predicting improved protein conformations with a temporal deep recurrent neural network

Pfeiffenberger, E., & Bates, P. A. (2018) · PLoS ONE

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 21

Predicting improved protein conformations with a temporal deep recurrent neural network

Pfeiffenberger, E., & Bates, P. A. (2018) · PLOS ONE

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 21

Refinement of protein-protein complexes in contact map space with metadynamics simulations

Pfeiffenberger, E., & Bates, P. A. (2019) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 15