Bekiranov, Stefan

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

Cawley, S., Bekiranov, S., Ng, H. H., Kapranov, P., Sekinger, E. A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A. J., et al. (2004) · Cell

Genomics and Chromatin DynamicsCancer-related molecular mechanisms research

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Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network

McConnell, M. J., Moran, J. V., Abyzov, A., Akbarian, S., Bae, T., Cortes-Ciriano, I., Erwin, J. A., Fasching, L., Flasch, D. A., Freed, D., et al. (2017) · Science

Genomic variations and chromosomal abnormalitiesGenetics and Neurodevelopmental Disorders

Cited by 262

Activation of the pluripotency factor OCT4 in smooth muscle cells is atheroprotective

Cherepanova, O. A., Gomez, D., Shankman, L. S., Swiatlowska, P., Williams, J., Sarmento, O. F., Alencar, G. F., Hess, D. L., Bevard, M. H., Greene, E. S., et al. (2016) · Nature Medicine

Atherosclerosis and Cardiovascular DiseasesPluripotent Stem Cells Research

Cited by 221

NF-κB Regulates Mesenchymal Transition for the Induction of Non-Small Cell Lung Cancer Initiating Cells

Kumar, M., Allison, D. F., Baranova, N. N., Wamsley, J. J., Katz, A. J., Bekiranov, S., Jones, D. R., & Mayo, M. W. (2013) · PLoS ONE

Cancer Cells and MetastasisNF-κB Signaling Pathways

Cited by 107

Measuring Chromatin Interaction Dynamics on the Second Time Scale at Single-Copy Genes

Poorey, K., Viswanathan, R., Carver, M. N., Karpova, T. S., Cirimotich, S. M., McNally, J. G., Bekiranov, S., & Auble, D. T. (2013) · Science

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 88

Interpretable meta-learning of multi-omics data for survival analysis and pathway enrichment

Cho, H. J., Shu, M., Bekiranov, S., Zang, C., & Zhang, A. (2023) · Bioinformatics

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 42

IdeaBench: Benchmarking Large Language Models for Research Idea Generation

Guo, S., Shariatmadari, A. H., Xiong, G., Huang, A., Kim, M., Williams, C. M., Bekiranov, S., & Zhang, A. (2025) · Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2

Topic ModelingArtificial Intelligence Applications

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