Huang, Kexin

Scientific discovery in the age of artificial intelligence.

Wang, H., Fu, T., Du, Y., Gao, W., Huang, K., Liu, Z., Chandak, P., Liu, S., Van Katwyk, P., Deac, A., et al. (2023) · Nature

Artificial Intelligence ApplicationsMachine Learning in Materials Science

Cited by 1,823

ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission

Huang, K., Altosaar, J., & Ranganath, R. (2019) · arXiv

Machine Learning in HealthcareMental Health via Writing

Cited by 618

Building a knowledge graph to enable precision medicine

Chandak, P., Huang, K., & Zitnik, M. (2023) · Scientific Data

Biomedical Text Mining and OntologiesBioinformatics and Genomic Networks

Cited by 522

Predicting transcriptional outcomes of novel multigene perturbations with GEARS

Roohani, Y., Huang, K., & Leskovec, J. (2024) · Nature Biotechnology

Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomics

Cited by 355

Graph representation learning in biomedicine and healthcare

Li, M. M., Huang, K., & Zitnik, M. (2022) · Nature Biomedical Engineering

Advanced Graph Neural NetworksBioinformatics and Genomic Networks

Cited by 294

A foundation model for clinician-centered drug repurposing

Huang, K., Chandak, P., Wang, Q., Havaldar, S., Vaid, A., Leskovec, J., Nadkarni, G. N., Glicksberg, B. S., Gehlenborg, N., & Zitnik, M. (2024) · Nature Medicine

Computational Drug Discovery MethodsMachine Learning in Healthcare

Cited by 249

Artificial intelligence foundation for therapeutic science

Huang, K., Fu, T., Gao, W., Zhao, Y., Roohani, Y., Leskovec, J., Coley, C. W., Xiao, C., Sun, J., & Zitnik, M. (2022) · Nature Chemical Biology

Computational Drug Discovery MethodsArtificial Intelligence in Healthcare and Education

Cited by 207

SkipGNN: predicting molecular interactions with skip-graph networks

Huang, K., Xiao, C., Glass, L. M., Zitnik, M., & Sun, J. (2020) · Scientific Reports

Bioinformatics and Genomic NetworksComputational Drug Discovery Methods

Cited by 133

Biomni: A general-purpose biomedical ai agent

Huang, K., Zhang, S., Wang, H., Qu, Y., Lu, Y., Roohani, Y., Li, R., Qiu, L., Li, G., Zhang, J., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory)

Biomedical Text Mining and OntologiesArtificial Intelligence in Healthcare and Education

Cited by 125

Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing

Wang, Q., Huang, K., Chandak, P., Zitnik, M., & Gehlenborg, N. (2023) · IEEE Transactions on Visualization and Computer Graphics

Explainable Artificial Intelligence (XAI)Data Visualization and Analytics

Cited by 82

Automated Hypothesis Validation with Agentic Sequential Falsifications

Huang, K., Jin, Y., Li, R., Li, M. Y., Candès, E., & Leskovec, J. (2025) · arXiv

Artificial Intelligence ApplicationsScientific Computing and Data Management

Cited by 7

Evaluating Large Language Models in Scientific Discovery

Song, Z., Lu, J., Du, Y., Yu, B., Pruyn, T. M., Huang, Y., Guo, K., Luo, X., Qu, Y., Qu, Y., et al. (2025) · arXiv

Topic ModelingArtificial Intelligence Applications

Cited by 3