Zhao, Keji

High-Resolution Profiling of Histone Methylations in the Human Genome

Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., & Zhao, K. (2007) · Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 6,845

Combinatorial patterns of histone acetylations and methylations in the human genome

Wang, Z., Zang, C., Rosenfeld, J. A., Schones, D. E., Barski, A., Cuddapah, S., Cui, K., Roh, T.-Y., Peng, W., Zhang, M. Q., et al. (2008) · Nature Genetics

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 2,331

Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

Wang, Z., Zang, C., Cui, K., Schones, D. E., Barski, A., Peng, W., & Zhao, K. (2009) · Cell

Genomics and Chromatin DynamicsHistone Deacetylase Inhibitors Research

Cited by 1,344

Global Mapping of H3K4me3 and H3K27me3 Reveals Specificity and Plasticity in Lineage Fate Determination of Differentiating CD4+ T Cells

Wei, G., Wei, L., Zhu, J., Zang, C., Hu-Li, J., Yao, Z., Cui, K., Kanno, Y., Roh, T.-Y., Watford, W. T., et al. (2009) · Immunity

T-cell and B-cell ImmunologyGenomics and Chromatin Dynamics

Cited by 1,152

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

Dowen, J. M., Fan, Z. P., Hnisz, D., Ren, G., Abraham, B. J., Zhang, L. N., Weintraub, A. S., Schuijers, J., Lee, T. I., Zhao, K., et al. (2014) · Cell

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 884

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells

Wu, H., D’Alessio, A. C., Ito, S., Xia, K., Wang, Z., Cui, K., Zhao, K., Eve Sun, Y., & Zhang, Y. (2011) · Nature

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 646

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

Cuddapah, S., Jothi, R., Schones, D. E., Roh, T.-Y., Cui, K., & Zhao, K. (2009) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 637

GATA3 controls Foxp3+ regulatory T cell fate during inflammation in mice

Wohlfert, E. A., Grainger, J. R., Bouladoux, N., Konkel, J. E., Oldenhove, G., Ribeiro, C. H., Hall, J. A., Yagi, R., Naik, S., Bhairavabhotla, R., et al. (2011) · Journal of Clinical Investigation

T-cell and B-cell ImmunologyPsoriasis: Treatment and Pathogenesis

Cited by 556

Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

Maunakea, A. K., Chepelev, I., Cui, K., & Zhao, K. (2013) · Cell Research

RNA Research and SplicingEpigenetics and DNA Methylation

Cited by 552

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

Jothi, R., Cuddapah, S., Barski, A., Cui, K., & Zhao, K. (2008) · Nucleic Acids Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 539

The Transcription Factor T-bet Is Induced by Multiple Pathways and Prevents an Endogenous Th2 Cell Program during Th1 Cell Responses

Zhu, J., Jankovic, D., Oler, A. J., Wei, G., Sharma, S., Hu, G., Guo, L., Yagi, R., Yamane, H., Punkosdy, G., et al. (2012) · Immunity

T-cell and B-cell ImmunologyPsoriasis: Treatment and Pathogenesis

Cited by 335

Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples

Jin, W., Tang, Q., Wan, M., Cui, K., Zhang, Y., Ren, G., Ni, B., Sklar, J., Przytycka, T. M., Childs, R., et al. (2015) · Nature

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 332

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

Chepelev, I., Wei, G., Wangsa, D., Tang, Q., & Zhao, K. (2012) · Cell Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 253

Chromatin accessibility profiling methods

Minnoye, L., Marinov, G. K., Krausgruber, T., Pan, L., Marand, A. P., Secchia, S., Greenleaf, W. J., Furlong, E. E. M., Zhao, K., Schmitz, R. J., et al. (2021) · Nature Reviews Methods Primers

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 206

Transformation of Accessible Chromatin and 3D Nucleome Underlies Lineage Commitment of Early T Cells

Hu, G., Cui, K., Fang, D., Hirose, S., Wang, X., Wangsa, D., Jin, W., Ried, T., Liu, P., Zhu, J., et al. (2018) · Immunity

Genomics and Chromatin DynamicsT-cell and B-cell Immunology

Cited by 199

Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

Hu, G., Schones, D. E., Cui, K., Ybarra, R., Northrup, D., Tang, Q., Gattinoni, L., Restifo, N. P., Huang, S., & Zhao, K. (2011) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 186

Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification

Ku, W. L., Nakamura, K., Gao, W., Cui, K., Hu, G., Tang, Q., Ni, B., & Zhao, K. (2019) · Nature Methods

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 181

Genomic location analysis by ChIP‐Seq

Barski, A., & Zhao, K. (2009) · Journal of Cellular Biochemistry

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 169

Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)

Carter, B., Ku, W. L., Kang, J. Y., Hu, G., Perrie, J., Tang, Q., & Zhao, K. (2019) · Nature Communications

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 148

Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins

LeRoy, G., Chepelev, I., DiMaggio, P. A., Blanco, M. A., Zee, B. M., Zhao, K., & Garcia, B. A. (2012) · Genome Biology

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 84

The DNA-binding inhibitor Id3 regulates IL-9 production in CD4+ T cells

Nakatsukasa, H., Zhang, D., Maruyama, T., Chen, H., Cui, K., Ishikawa, M., Deng, L., Zanvit, P., Tu, E., Jin, W., et al. (2015) · Nature Immunology

T-cell and B-cell ImmunologyPsoriasis: Treatment and Pathogenesis

Cited by 80

Rapid Recall Ability of Memory T cells is Encoded in their Epigenome

Barski, A., Cuddapah, S., Kartashov, A. V., Liu, C., Imamichi, H., Yang, W., Peng, W., Lane, H. C., & Zhao, K. (2017) · Scientific Reports

T-cell and B-cell ImmunologyGenomics and Chromatin Dynamics

Cited by 49