Yang, Zhongyue J.

EnzyHTP: A High-Throughput Computational Platform for Enzyme Modeling

Shao, Q., Jiang, Y., & Yang, Z. (2021) · Journal of Chemical Information and Modeling

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 43

EnzyHTP: A High-Throughput Computational Platform for Enzyme Modeling

Shao, Q., Jiang, Y., & Yang, Z. J. (2022) · Journal of Chemical Information and Modeling

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 43

Molecular insights into human phosphatidylserine synthase 1 reveal its inhibition promotes LDL uptake

Long, T., Li, D., Vale, G., Jiang, Y., Schmiege, P., Yang, Z. J., McDonald, J. G., & Li, X. (2024) · Cell

Cholesterol and Lipid MetabolismLipid Membrane Structure and Behavior

Cited by 31

Mutexa: A Computational Ecosystem for IntelligentProtein Engineering

Yang, Z., Shao, Q., Jiang, Y., Jurich, C., Ran, X., Juarez, R., Yan, B., Stull, S., Gollu, A., & Ding, N. (2023) · Journal of Chemical Theory and Computation

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 28

Mutexa: A Computational Ecosystem for Intelligent Protein Engineering

Yang, Z. J., Shao, Q., Jiang, Y., Jurich, C., Ran, X., Juarez, R. J., Yan, B., Stull, S. L., Gollu, A., & Ding, N. (2023) · Journal of Chemical Theory and Computation

Protein Structure and DynamicsEnzyme Catalysis and Immobilization

Cited by 28

EnzyKR: a chirality-aware deep learning model for predicting the outcomes of the hydrolase-catalyzed kinetic resolution

Ran, X., Jiang, Y., Shao, Q., & Yang, Z. J. (2023) · Chemical Science

Enzyme Catalysis and ImmobilizationAsymmetric Synthesis and Catalysis

Cited by 25

EnzyHTP Computational Directed Evolution with Adaptive Resource Allocation

Shao, Q., Jiang, Y., & Yang, Z. J. (2023) · Journal of Chemical Information and Modeling

Enzyme Catalysis and ImmobilizationProtein Structure and Dynamics

Cited by 23

IntEnzyDB: an Integrated Structure–Kinetics Enzymology Database

Yan, B., Ran, X., Gollu, A., Cheng, Z., Zhou, X., Chen, Y., & Yang, Z. J. (2022) · Journal of Chemical Information and Modeling

Enzyme Catalysis and ImmobilizationProtein Structure and Dynamics

Cited by 23

IntEnzyDB: an Integrated Structure-Kinetics Enzymology Database

Yan, B., Ran, X., Gollu, A., Cheng, Z., Zhou, X., Chen, Y., & Yang, Z. (2022) · Journal of Chemical Information and Modeling

Enzyme Catalysis and ImmobilizationProtein Structure and Dynamics

Cited by 23

LassoPred: a tool to predict the 3D structure of lasso peptides

Ouyang, X., Ran, X., Xu, H., Al-Abssi, R., Zhao, Y.-L., Link, A. J., & Yang, Z. J. (2025) · Nature Communications

Protein Structure and DynamicsMicrobial Natural Products and Biosynthesis

Cited by 11

Finding the dark matter: Large language model‐based enzyme kinetic data extractor and its validation

Wei, G., Ran, X., AI‐Abssi, R., & Yang, Z. (2025) · Protein Science

Biomedical Text Mining and OntologiesEnzyme Catalysis and Immobilization

Cited by 10