Chen, Jake Y.

Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution

Dosztányi, Z., Chen, J., Dunker, A. K., Simon, I., & Tompa, P. (2006) · Journal of Proteome Research

Bioinformatics and Genomic NetworksProtein Structure and Dynamics

Cited by 341

Semantic Web meets Integrative Biology: a survey

Chen, H., Yu, T., & Chen, J. Y. (2013) · Briefings in Bioinformatics

Semantic Web and OntologiesBiomedical Text Mining and Ontologies

Cited by 65

Metabolic alterations mediated by STAT3 promotes drug persistence in CML

Patel, S. B., Nemkov, T., Stefanoni, D., Benavides, G. A., Bassal, M. A., Crown, B. L., Matkins, V. R., Camacho, V., Kuznetsova, V., Hoang, A. T., et al. (2021) · Leukemia

Chronic Myeloid Leukemia TreatmentsAcute Myeloid Leukemia Research

Cited by 56

A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts

Zindl, C. L., Witte, S. J., Laufer, V. A., Gao, M., Yue, Z., Janowski, K. M., Cai, B., Frey, B. F., Silberger, D. J., Harbour, S. N., et al. (2022) · Immunity

IL-33, ST2, and ILC PathwaysCytokine Signaling Pathways and Interactions

Cited by 49

AI-readiness Criteria for Biomedical Data

Clark, T., Caufield, H., Parker, J. A., Al Manir, S., Amorim, E., Eddy, J., Gim, N., Gow, B., Goar, W., Hansen, J. N., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Research Data Management PracticesArtificial Intelligence in Healthcare and Education

Cited by 32

PAGER: constructing PAGs and new PAG-PAG relationships for network biology

Yue, Z., Kshirsagar, M. M., Nguyen, T., Suphavilai, C., Neylon, M. T., Zhu, L., Ratliff, T., & Chen, J. Y. (2015) · Bioinformatics

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 30

PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology

Yue, Z., Zheng, Q., Neylon, M. T., Yoo, M., Shin, J., Zhao, Z., Tan, A. C., & Chen, J. Y. (2018) · Nucleic Acids Research

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 27

GOLDEN fusion: a graph-oriented learning with domain-embedding network fusion for generating super gene sets in functional genomics

Li, Q., Nichols, C., Welner, R. S., Chen, J. Y., Ku, W.-S., & Yue, Z. (2026) · Briefings in Bioinformatics

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 0