Lu, Alex X.

Protein structure generation via folding diffusion

Wu, K. E., Yang, K. K., Berg, R. V. D., Zou, J. Y., Lu, A. X., & Amini, A. P. (2022) · arXiv

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 193

Protein generation with evolutionary diffusion: sequence is all you need

Alamdari, S., Thakkar, N., van den Berg, R., Tenenholtz, N., Strome, R., Moses, A. M., Lu, A. X., Fusi, N., Amini, A. P., & Yang, K. K. (2023) · eLife

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 154

Convolutions are competitive with transformers for protein sequence pretraining

Yang, K. K., Fusi, N., & Lu, A. X. (2024) · Cell Systems

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 137

Zero-shot evaluation reveals limitations of single-cell foundation models

Kedzierska, K. Z., Crawford, L., Amini, A. P., & Lu, A. X. (2025) · Genome Biology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 109

Assessing the limits of zero-shot foundation models in single-cell biology

Kedzierska, K. Z., Crawford, L., Amini, A. P., & Lu, A. X. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 61

Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models

Li, F.-Z., Amini, A. P., Yue, Y., Yang, K. K., & Lu, A. X. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Machine Learning in BioinformaticsProtein Structure and Dynamics

Cited by 51

ASL Citizen: A Community-Sourced Dataset for Advancing Isolated Sign Language Recognition

Desai, A., Berger, L., Minakov, F., Milano, N., Singh, C., Pumphrey, K., Ladner, R., III, H. D., Lu, A. X., Caselli, N., et al. (2023) · Advances in Neural Information Processing Systems 36

Hand Gesture Recognition SystemsHearing Impairment and Communication

Cited by 39

Systemic Biases in Sign Language AI Research: A Deaf-Led Call to Reevaluate Research Agendas

Desai, A., De Meulder, M., Hochgesang, J. A., Kocab, A., & Lu, A. X. (2024) · Proceedings of the Language Resources and Evaluation Conference

Hearing Impairment and CommunicationEthics and Social Impacts of AI

Cited by 25