Paten, Benedict

LungMAP Portal Ecosystem: Systems-level Exploration of the Lung

Gaddis, N., Fortriede, J., Guo, M., Bardes, E. E., Kouril, M., Tabar, S., Burns, K., Ardini-Poleske, M. E., Loos, S., Schnell, D., et al. (2024) · American Journal of Respiratory Cell and Molecular Biology

Single-cell and spatial transcriptomicsBioinformatics and Genomic Networks

Cited by 62

Gaps and complex structurally variant loci in phased genome assemblies

Porubsky, D., Vollger, M. R., Harvey, W. T., Rozanski, A. N., Ebert, P., Hickey, G., Hasenfeld, P., Sanders, A. D., Stober, C., Human Pangenome Reference Consortium, et al. (2023) · Genome Research

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 58

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells

Tunstall, T., Kock, R., Vahala, J., Diekhans, M., Fiddes, I., Armstrong, J., Paten, B., Ryder, O. A., & Steiner, C. C. (2018) · Genome Research

Genetic diversity and population structureGenetic and phenotypic traits in livestock

Cited by 50

GBZ file format for pangenome graphs

Sirén, J., & Paten, B. (2022) · Bioinformatics

Algorithms and Data CompressionGenomics and Phylogenetic Studies

Cited by 35

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments

Krasheninnikova, K., Diekhans, M., Armstrong, J., Dievskii, A., Paten, B., & O'Brien, S. (2020) · GigaScience

Genome Rearrangement AlgorithmsGenomics and Phylogenetic Studies

Cited by 30

Supporting data for "halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments"

Krasheninnikova, K., Diekhans, M., Armstrong, J., Dievskii, A., Paten, B., & O’Brien, S. (2020) · GigaScience Database

Genome Rearrangement AlgorithmsGenomics and Phylogenetic Studies

Cited by 0