Gibbons, Sean M.

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology

Scientific Computing and Data ManagementGut microbiota and health

Cited by 23,742

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature

Microbial Community Ecology and PhysiologyGenomics and Phylogenetic Studies

Cited by 2,684

Adaptive Evolution within Gut Microbiomes of Healthy People

Zhao, S., Lieberman, T. D., Poyet, M., Kauffman, K. M., Gibbons, S. M., Groussin, M., Xavier, R. J., & Alm, E. J. (2019) · Cell Host & Microbe

Gut microbiota and healthEvolution and Genetic Dynamics

Cited by 434

The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

Rocca, J. D., Simonin, M., Blaszczak, J. R., Ernakovich, J. G., Gibbons, S. M., Midani, F. S., & Washburne, A. D. (2019) · Frontiers in Microbiology

Microbial Community Ecology and PhysiologySoil Carbon and Nitrogen Dynamics

Cited by 213

Genome–microbiome interplay provides insight into the determinants of the human blood metabolome

Diener, C., Dai, C. L., Wilmanski, T., Baloni, P., Smith, B., Rappaport, N., Hood, L., Magis, A. T., & Gibbons, S. M. (2022) · Nature Metabolism

Gut microbiota and healthMetabolomics and Mass Spectrometry Studies

Cited by 102

From taxonomy to metabolic output: what factors define gut microbiome health?

Wilmanski, T., Rappaport, N., Diener, C., Gibbons, S. M., & Price, N. D. (2021) · Gut Microbes

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 73

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment

Califf, K. J., Schwarzberg-Lipson, K., Garg, N., Gibbons, S. M., Caporaso, J. G., Slots, J., Cohen, C., Dorrestein, P. C., & Kelley, S. T. (2017) · mSystems

Oral microbiology and periodontitis researchBacterial biofilms and quorum sensing

Cited by 66

Endospores and other lysis-resistant bacteria comprise a widely shared core community within the human microbiota

Kearney, S. M., Gibbons, S. M., Poyet, M., Gurry, T., Bullock, K., Allegretti, J. R., Clish, C. B., & Alm, E. J. (2018) · The ISME Journal

Gut microbiota and healthClostridium difficile and Clostridium perfringens research

Cited by 59