Sidow, Arend

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., et al. (2012) · Genome Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 2,033

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++

Davydov, E. V., Goode, D. L., Sirota, M., Cooper, G. M., Sidow, A., & Batzoglou, S. (2010) · PLoS Computational Biology

Genomics and Phylogenetic StudiesGenomics and Chromatin Dynamics

Cited by 1,757

Distribution and intensity of constraint in mammalian genomic sequence

Cooper, G. M., Stone, E. A., Asimenos, G., Green, E. D., Batzoglou, S., & Sidow, A. (2005) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,359

LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA

Brudno, M., Do, C. B., Cooper, G. M., Kim, M. F., Davydov, E., Program, N. C. S., Green, E. D., Sidow, A., & Batzoglou, S. (2003) · Genome Research

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 1,115

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Zook, J. M., Catoe, D., McDaniel, J., Vang, L., Spies, N., Sidow, A., Weng, Z., Liu, Y., Mason, C. E., Alexander, N., et al. (2016) · Scientific Data

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 811

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Valouev, A., Johnson, D. S., Sundquist, A., Medina, C., Anton, E., Batzoglou, S., Myers, R. M., & Sidow, A. (2008) · Nature Methods

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 695

Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses

Kenzelmann Broz, D., Spano Mello, S., Bieging, K. T., Jiang, D., Dusek, R. L., Brady, C. A., Sidow, A., & Attardi, L. D. (2013) · Genes & Development

Cancer-related Molecular PathwaysAutophagy in Disease and Therapy

Cited by 443

Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells

Soucie, E. L., Weng, Z., Geirsdóttir, L., Molawi, K., Maurizio, J., Fenouil, R., Mossadegh-Keller, N., Gimenez, G., VanHille, L., Beniazza, M., et al. (2016) · Science

Genomics and Chromatin DynamicsPluripotent Stem Cells Research

Cited by 263

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Kundaje, A., Kyriazopoulou-Panagiotopoulou, S., Libbrecht, M., Smith, C. L., Raha, D., Winters, E. E., Johnson, S. M., Snyder, M., Batzoglou, S., & Sidow, A. (2012) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 178

Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes

Cooper, G. M., Brudno, M., Stone, E. A., Dubchak, I., Batzoglou, S., & Sidow, A. (2004) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 134