Tilgner, Hagen

Landscape of transcription in human cells

Djebali, S., Davis, C. A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., Tanzer, A., Lagarde, J., Lin, W., Schlesinger, F., et al. (2012) · Nature

Genomics and Chromatin DynamicsRNA Research and Splicing

Cited by 5,187

SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

Koopmans, F., van Nierop, P., Andres-Alonso, M., Byrnes, A., Cijsouw, T., Coba, M. P., Cornelisse, L. N., Farrell, R. J., Goldschmidt, H. L., Howrigan, D. P., et al. (2019) · Neuron

Biomedical Text Mining and OntologiesBioinformatics and Genomic Networks

Cited by 938

A single-molecule long-read survey of the human transcriptome

Sharon, D., Tilgner, H., Grubert, F., & Snyder, M. (2013) · Nature Biotechnology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 701

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

Sahraeian, S. M. E., Mohiyuddin, M., Sebra, R., Tilgner, H., Afshar, P. T., Au, K. F., Bani Asadi, N., Gerstein, M. B., Wong, W. H., Snyder, M. P., et al. (2017) · Nature Communications

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 376

Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells

Gupta, I., Collier, P. G., Haase, B., Mahfouz, A., Joglekar, A., Floyd, T., Koopmans, F., Barres, B., Smit, A. B., Sloan, S. A., et al. (2018) · Nature Biotechnology

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 343

Defining a personal, allele-specific, and single-molecule long-read transcriptome

Tilgner, H., Grubert, F., Sharon, D., & Snyder, M. P. (2014) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 266

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

Joglekar, A., Prjibelski, A., Mahfouz, A., Collier, P., Lin, S., Schlusche, A. K., Marrocco, J., Williams, S. R., Haase, B., Hayes, A., et al. (2021) · Nature Communications

RNA Research and SplicingSingle-cell and spatial transcriptomics

Cited by 229

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events

Tilgner, H., Jahanbani, F., Blauwkamp, T., Moshrefi, A., Jaeger, E., Chen, F., Harel, I., Bustamante, C. D., Rasmussen, M., & Snyder, M. P. (2015) · Nature Biotechnology

RNA Research and SplicingGenomics and Phylogenetic Studies

Cited by 223

Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans

Cenik, C., Sarinay Cenik, E., Byeon, G. W., Grubert, F., Candille, S. I., Spacek, D., Alsallakh, B., Tilgner, H., Araya, C. L., Tang, H., et al. (2015) · Genome Research

RNA and protein synthesis mechanismsRNA Research and Splicing

Cited by 208

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

Cenik, C., Cenik, E. S., Byeon, G. W., Grubert, F., Candille, S. I., Spacek, D., Alsallakh, B., Tilgner, H., Araya, C. L., Tang, H., et al. (2015) · Genome Research

RNA and protein synthesis mechanismsRNA Research and Splicing

Cited by 208

Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids

Notaras, M., Lodhi, A., Dündar, F., Collier, P., Sayles, N. M., Tilgner, H., Greening, D., & Colak, D. (2022) · Molecular Psychiatry

Pluripotent Stem Cells ResearchSchizophrenia research and treatment

Cited by 150

Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue

Hardwick, S. A., Hu, W., Joglekar, A., Fan, L., Collier, P. G., Foord, C., Balacco, J., Lanjewar, S., Sampson, M. M., Koopmans, F., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsRNA Research and Splicing

Cited by 119

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

Tilgner, H., Jahanbani, F., Gupta, I., Collier, P., Wei, E., Rasmussen, M., & Snyder, M. (2018) · Genome Research

RNA Research and SplicingGenomics and Phylogenetic Studies

Cited by 71