Lun, Aaron T L

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

Haghverdi, L., Lun, A. T. L., Morgan, M. D., & Marioni, J. C. (2018) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 2,416

Scater: Pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

McCarthy, D. J., Campbell, K. R., Lun, A. T. L., & Wills, Q. F. (2017) · Bioinformatics

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 1,852

Orchestrating single-cell analysis with Bioconductor

Amezquita, R. A., Lun, A. T. L., Becht, E., Carey, V. J., Carpp, L. N., Geistlinger, L., Marini, F., Rue-Albrecht, K., Risso, D., Soneson, C., et al. (2020) · Nature Methods

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 945

Doublet identification in single-cell sequencing data using scDblFinder

Germain, P.-L., Lun, A., Garcia Meixide, C., Macnair, W., & Robinson, M. D. (2022) · F1000Research

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 684

Testing for differential abundance in mass cytometry data

Lun, A. T. L., Richard, A. C., & Marioni, J. C. (2017) · Nature Methods

Single-cell and spatial transcriptomicsMetabolomics and Mass Spectrometry Studies

Cited by 181

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

Lun, A. T. L., & Marioni, J. C. (2017) · Biostatistics

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 159

Transcriptional Heterogeneity in Naive and Primed Human Pluripotent Stem Cells at Single-Cell Resolution

Messmer, T., von Meyenn, F., Savino, A., Santos, F., Mohammed, H., Lun, A. T. L., Marioni, J. C., & Reik, W. (2019) · Cell Reports

Pluripotent Stem Cells ResearchSingle-cell and spatial transcriptomics

Cited by 156

Transcription Factor PU.1 Promotes Conventional Dendritic Cell Identity and Function via Induction of Transcriptional Regulator DC-SCRIPT

Chopin, M., Lun, A. T., Zhan, Y., Schreuder, J., Coughlan, H., D’Amico, A., Mielke, L. A., Almeida, F. F., Kueh, A. J., Dickins, R. A., et al. (2019) · Immunity

Immunotherapy and Immune ResponsesT-cell and B-cell Immunology

Cited by 104