Cheng, Jun

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1

Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy

Autophagy in Disease and TherapyCalcium signaling and nucleotide metabolism

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Accurate proteome-wide missense variant effect prediction with AlphaMissense

Cheng, J., Novati, G., Pan, J., Bycroft, C., Žemgulytė, A., Applebaum, T., Pritzel, A., Wong, L. H., Zielinski, M., Sargeant, T., et al. (2023) · Science

Genomics and Rare DiseasesGenetic Associations and Epidemiology

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AlphaGenome: advancing regulatory variant effect prediction with a unified DNA sequence model

Avsec, Ž., Latysheva, N., Cheng, J., Novati, G., Taylor, K. R., Ward, T., Bycroft, C., Nicolaisen, L., Arvaniti, E., Pan, J., et al. (2025) · Nature

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

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Advancing regulatory variant effect prediction with AlphaGenome

Avsec, Ž., Latysheva, N., Cheng, J., Novati, G., Taylor, K. R., Ward, T., Bycroft, C., Nicolaisen, L., Arvaniti, E., Pan, J., et al. (2026) · Nature

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

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MMSplice: modular modeling improves the predictions of genetic variant effects on splicing

Cheng, J., Nguyen, T. Y. D., Cygan, K. J., Çelik, M. H., Fairbrother, W. G., Avsec, Ž., & Gagneur, J. (2019) · Genome Biology

RNA Research and SplicingGenomics and Rare Diseases

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Cis -regulatory elements explain most of the mRNA stability variation across genes in yeast

Cheng, J., Maier, K. C., Avsec, Ž., Rus, P., & Gagneur, J. (2017) · RNA

RNA Research and SplicingRNA and protein synthesis mechanisms

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Cis-regulatory elements explain most of the mRNA stability variation across genes in yeast

Cheng, J., Maier, K. C., Avsec, Ž., Rus, P., & Gagneur, J. (2016) · bioRxiv (Cold Spring Harbor Laboratory)

RNA Research and SplicingRNA and protein synthesis mechanisms

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