Yim, Jason

Protein complex prediction with AlphaFold-Multimer

Evans, R., O’Neill, M., Pritzel, A., Antropova, N., Senior, A., Green, T., Žídek, A., Bates, R., Blackwell, S., Yim, J., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 3,808

Broadly applicable and accurate protein design by integrating structure prediction networks and diffusion generative models

Watson, J. L., Juergens, D., Bennett, N. R., Trippe, B. L., Yim, J., Eisenach, H. E., Ahern, W., Borst, A. J., Ragotte, R. J., Milles, L. F., et al. (2022) · Nature

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 2,369

De novo design of protein structure and function with RFdiffusion

Watson, J. L., Juergens, D., Bennett, N. R., Trippe, B. L., Yim, J., Eisenach, H. E., Ahern, W., Borst, A. J., Ragotte, R. J., Milles, L. F., et al. (2023) · Nature

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 2,325

Scalable emulation of protein equilibrium ensembles with generative deep learning

Lewis, S., Hempel, T., Jiménez-Luna, J., Gastegger, M., Xie, Y., Foong, A. Y. K., Satorras, V. G., Abdin, O., Veeling, B. S., Zaporozhets, I., et al. (2025) · Science

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 390

Scalable emulation of protein equilibrium ensembles with generative deep learning

Lewis, S., Hempel, T., Jiménez Luna, J., Gastegger, M., Xie, Y., Foong, A. Y. K., García Satorras, V., Abdin, O., Veeling, B. S., Zaporozhets, I., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 349

Predicting conversion to wet age-related macular degeneration using deep learning

Yim, J., Chopra, R., Spitz, T., Winkens, J., Obika, A., Kelly, C., Askham, H., Lukic, M., Huemer, J., Fasler, K., et al. (2020) · Nature Medicine

Retinal Imaging and AnalysisRetinal Diseases and Treatments

Cited by 297

Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem

Trippe, B. L., Yim, J., Tischer, D., Baker, D., Broderick, T., Barzilay, R., & Jaakkola, T. (2022) · arXiv

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 92