Azizi, Elham

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

Azizi, E., Carr, A. J., Plitas, G., Cornish, A. E., Konopacki, C., Prabhakaran, S., Nainys, J., Wu, K., Kiseliovas, V., Setty, M., et al. (2018) · Cell

Single-cell and spatial transcriptomicsCancer Immunotherapy and Biomarkers

Cited by 1,976

The Mycobacterium tuberculosis regulatory network and hypoxia

Galagan, J. E., Minch, K., Peterson, M., Lyubetskaya, A., Azizi, E., Sweet, L., Gomes, A., Rustad, T., Dolganov, G., Glotova, I., et al. (2013) · Nature

Tuberculosis Research and EpidemiologyBacterial Genetics and Biotechnology

Cited by 431

Deep generative modeling of sample-level heterogeneity in single-cell genomics

Boyeau, P., Hong, J., Gayoso, A., Kim, M., McFaline-Figueroa, J. L., Jordan, M. I., Azizi, E., Ergen, C., & Yosef, N. (2025) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 55

Squidiff: predicting cellular development and responses to perturbations using a diffusion model

He, S., Zhu, Y., Tavakol, D. N., Ye, H., Lao, Y.-H., Zhu, Z., Xu, C., Chauhan, S., Garty, G., Tomer, R., et al. (2026) · Nature Methods

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 38

CRISPRmap: Sequencing-free optical pooled screens mapping multi-omic phenotypes in cells and tissue

Gu, J., Iyer, A., Wesley, B., Taglialatela, A., Leuzzi, G., Hangai, S., Decker, A., Gu, R., Klickstein, N., Shuai, Y., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

CRISPR and Genetic EngineeringSingle-cell and spatial transcriptomics

Cited by 10