Minot, Samuel S.

The human gut virome: inter-individual variation and dynamic response to diet

Minot, S., Sinha, R., Chen, J., Li, H., Keilbaugh, S. A., Wu, G. D., Lewis, J. D., & Bushman, F. D. (2011) · Genome Research

Bacteriophages and microbial interactionsGut microbiota and health

Cited by 935

Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer

Galeano Niño, J. L., Wu, H., LaCourse, K. D., Kempchinsky, A. G., Baryiames, A., Barber, B., Futran, N., Houlton, J., Sather, C., Sicinska, E., et al. (2022) · Nature

Gut microbiota and healthSingle-cell and spatial transcriptomics

Cited by 887

A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche

Zepeda-Rivera, M., Minot, S. S., Bouzek, H., Wu, H., Blanco-Míguez, A., Manghi, P., Jones, D. S., LaCourse, K. D., Wu, Y., McMahon, E. F., et al. (2024) · Nature

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 451

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

McIntyre, A. B. R., Ounit, R., Afshinnekoo, E., Prill, R. J., Hénaff, E., Alexander, N., Minot, S. S., Danko, D., Foox, J., Ahsanuddin, S., et al. (2017) · Genome Biology

Genomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity Studies

Cited by 342

Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization.

Peddu, V., Shean, R. C., Xie, H., Shrestha, L., Perchetti, G. A., Minot, S. S., Roychoudhury, P., Huang, M.-L., Nalla, A., Reddy, S. B., et al. (2020) · Clinical Chemistry

SARS-CoV-2 detection and testingSARS-CoV-2 and COVID-19 Research

Cited by 73

INVADEseq to identify cell-adherent or invasive bacteria and the associated host transcriptome at single-cell-level resolution

Galeano Niño, J. L., Wu, H., LaCourse, K. D., Srinivasan, H., Fitzgibbon, M., Minot, S. S., Sather, C., Johnston, C. D., & Bullman, S. (2023) · Nature Protocols

Single-cell and spatial transcriptomicsGut microbiota and health

Cited by 36