Schmidt, Alexander

The quantitative proteome of a human cell line

Beck, M., Schmidt, A., Malmstroem, J., Claassen, M., Ori, A., Szymborska, A., Herzog, F., Rinner, O., Ellenberg, J., & Aebersold, R. (2011) · Molecular Systems Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 816

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

Marguerat, S., Schmidt, A., Codlin, S., Chen, W., Aebersold, R., & Bähler, J. (2012) · Cell

Gene Regulatory Network AnalysisAdvanced Proteomics Techniques and Applications

Cited by 571

Proteome organization in a genome-reduced bacterium

Kühner, S., van Noort, V., Betts, M. J., Leo-Macias, A., Batisse, C., Rode, M., Yamada, T., Maier, T., Bader, S., Beltran-Alvarez, P., et al. (2009) · Science

Bacterial Genetics and BiotechnologyMicrobial infections and disease research

Cited by 471

Glucocorticoids promote breast cancer metastasis

Obradović, M. M. S., Hamelin, B., Manevski, N., Couto, J. P., Sethi, A., Coissieux, M.-M., Münst, S., Okamoto, R., Kohler, H., Schmidt, A., et al. (2019) · Nature

Estrogen and related hormone effectsCancer, Stress, Anesthesia, and Immune Response

Cited by 462

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

Malmström, J., Beck, M., Schmidt, A., Lange, V., Deutsch, E. W., & Aebersold, R. (2009) · Nature

Advanced Proteomics Techniques and ApplicationsLeptospirosis research and findings

Cited by 421

Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy

Correia, A. L., Guimaraes, J. C., Auf der Maur, P., De Silva, D., Trefny, M. P., Okamoto, R., Bruno, S., Schmidt, A., Mertz, K., Volkmann, K., et al. (2021) · Nature

Immune Cell Function and InteractionCancer Cells and Metastasis

Cited by 339

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

Picotti, P., Clément-Ziza, M., Lam, H., Campbell, D. S., Schmidt, A., Deutsch, E. W., Röst, H., Sun, Z., Rinner, O., Reiter, L., et al. (2013) · Nature

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 318

Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry

Reiter, L., Claassen, M., Schrimpf, S. P., Jovanovic, M., Schmidt, A., Buhmann, J. M., Hengartner, M. O., & Aebersold, R. (2009) · Molecular & Cellular Proteomics

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 312

Quantification of mRNA and protein and integration with protein turnover in a bacterium

Maier, T., Schmidt, A., Güell, M., Kühner, S., Gavin, A., Aebersold, R., & Serrano, L. (2011) · Molecular Systems Biology

Bacterial Genetics and BiotechnologyGene Regulatory Network Analysis

Cited by 297

Regulation of α-synuclein by chaperones in mammalian cells

Burmann, B. M., Gerez, J. A., Matečko-Burmann, I., Campioni, S., Kumari, P., Ghosh, D., Mazur, A., Aspholm, E. E., Šulskis, D., Wawrzyniuk, M., et al. (2020) · Nature

Parkinson's Disease Mechanisms and TreatmentsHeat shock proteins research

Cited by 255

Critical assessment of proteome‐wide label‐free absolute abundance estimation strategies

Ahrné, E., Molzahn, L., Glatter, T., & Schmidt, A. (2013) · PROTEOMICS

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 247

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates

Riba, A., Di Nanni, N., Mittal, N., Arhné, E., Schmidt, A., & Zavolan, M. (2019) · Proceedings of the National Academy of Sciences

RNA and protein synthesis mechanismsRNA modifications and cancer

Cited by 209

Functioning of a metabolic flux sensor in Escherichia coli

Kochanowski, K., Volkmer, B., Gerosa, L., Haverkorn van Rijsewijk, B. R., Schmidt, A., & Heinemann, M. (2013) · Proceedings of the National Academy of Sciences

Microbial Metabolic Engineering and BioproductionBacterial Genetics and Biotechnology

Cited by 196

Disparate Impact of Oxidative Host Defenses Determines the Fate of Salmonella during Systemic Infection in Mice

Burton, N. A., Schürmann, N., Casse, O., Steeb, A. K., Claudi, B., Zankl, J., Schmidt, A., & Bumann, D. (2014) · Cell Host & Microbe

Neutrophil, Myeloperoxidase and Oxidative MechanismsRedox biology and oxidative stress

Cited by 175

Integrative proteogenomic characterization of hepatocellular carcinoma across etiologies and stages

Ng, C. K. Y., Dazert, E., Boldanova, T., Coto-Llerena, M., Nuciforo, S., Ercan, C., Suslov, A., Meier, M.-A., Bock, T., Schmidt, A., et al. (2022) · Nature Communications

Hepatocellular Carcinoma Treatment and PrognosisAdvanced Proteomics Techniques and Applications

Cited by 165

Visual proteomics of the human pathogen Leptospira interrogans

Beck, M., Malmström, J. A., Lange, V., Schmidt, A., Deutsch, E. W., & Aebersold, R. (2009) · Nature Methods

Advanced Electron Microscopy Techniques and ApplicationsAdvanced Proteomics Techniques and Applications

Cited by 156

Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter

Lambert, E., Mehdipour, A. R., Schmidt, A., Hummer, G., & Perez, C. (2022) · Nature Communications

Drug Transport and Resistance MechanismsLipid Membrane Structure and Behavior

Cited by 24