Kaas, Rolf Sommer

ResFinder 4.0 for predictions of phenotypes from genotypes

Bortolaia, V., Kaas, R. S., Ruppe, E., Roberts, M. C., Schwarz, S., Cattoir, V., Philippon, A., Allesoe, R. L., Rebelo, A. R., Florensa, A. F., et al. (2020) · Journal of Antimicrobial Chemotherapy

Antibiotic Resistance in BacteriaBacterial Identification and Susceptibility Testing

Cited by 3,373

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, R. S., Munk, P., Njage, P., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Pedersen, S. K., Kjeldgaard, J., et al. (2019) · Nature Communications

Pharmaceutical and Antibiotic Environmental ImpactsAntibiotic Resistance in Bacteria

Cited by 1,199

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

MetaHIT Consortium, Nielsen, H. B., Almeida, M., Juncker, A. S., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., et al. (2014) · Nature Biotechnology

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 1,184

ResFinder–an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Florensa, A. F., Kaas, R. S., Clausen, P. T. L. C., Aytan-Aktug, D., & Aarestrup, F. M. (2022) · Microbial Genomics

Antibiotic Resistance in BacteriaAntibiotic Use and Resistance

Cited by 695

Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012

Hendriksen, R. S., Leekitcharoenphon, P., Lukjancenko, O., Lukwesa-Musyani, C., Tambatamba, B., Mwaba, J., Kalonda, A., Nakazwe, R., Kwenda, G., Jensen, J. D., et al. (2015) · Journal of Clinical Microbiology

Salmonella and Campylobacter epidemiologyAntibiotic Resistance in Bacteria

Cited by 90

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models, with PathogenFinder2

Ferrer Florensa, A., Almagro Armenteros, J. J., Kaas, R. S., Conradsen Clausen, P. T. L., Nielsen, H., Rost, B., & Aarestrup, F. M. (2025) · Bioinformatics

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 50

Whole-genome prediction of bacterial pathogenic capacity on novel bacteria using protein language models with PathogenFinder2

Ferrer Florensa, A., Almagro Armenteros, J. J., Kaas, R. S., Clausen, P. T. L. C., Nielsen, H., Rost, B., & Aarestrup, F. M. (2026) · Bioinformatics

Genomics and Phylogenetic StudiesMachine Learning in Bioinformatics

Cited by 50