Eeckhoute, Jérôme

Model-based Analysis of ChIP-Seq (MACS)

Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nusbaum, C., Myers, R. M., Brown, M., Li, W., et al. (2008) · Genome Biology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 18,386

FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription

Lupien, M., Eeckhoute, J., Meyer, C. A., Wang, Q., Zhang, Y., Li, W., Carroll, J. S., Liu, X. S., & Brown, M. (2008) · Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 983

Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin

Lefebvre, P., Lalloyer, F., Baugé, E., Pawlak, M., Gheeraert, C., Dehondt, H., Vanhoutte, J., Woitrain, E., Hennuyer, N., Mazuy, C., et al. (2017) · JCI Insight

Liver Disease Diagnosis and TreatmentLiver physiology and pathology

Cited by 117

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers

Eeckhoute, J., Lupien, M., Meyer, C. A., Verzi, M. P., Shivdasani, R. A., Liu, X. S., & Brown, M. (2009) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 106

Loss of hepatocyte identity following aberrant YAP activation: A key mechanism in alcoholic hepatitis

Bou Saleh, M., Louvet, A., Ntandja-Wandji, L. C., Boleslawski, E., Gnemmi, V., Lassailly, G., Truant, S., Maggiotto, F., Ningarhari, M., Artru, F., et al. (2021) · Journal of Hepatology

Hippo pathway signaling and YAP/TAZLiver physiology and pathology

Cited by 83

Hepatocyte Nuclear Factor 4 enhances the Hepatocyte Nuclear Factor 1 -mediated activation of transcription

Eeckhoute, J. (2004) · Nucleic Acids Research

Genomics and Chromatin DynamicsLiver physiology and pathology

Cited by 71

The nuclear bile acid receptor FXR is a PKA- and FOXA2-sensitive activator of fasting hepatic gluconeogenesis

Ploton, M., Mazuy, C., Gheeraert, C., Dubois, V., Berthier, A., Dubois-Chevalier, J., Maréchal, X., Bantubungi, K., Diemer, H., Cianférani, S., et al. (2018) · Journal of Hepatology

Drug Transport and Resistance MechanismsMetabolism, Diabetes, and Cancer

Cited by 63

Control of Cell Identity by the Nuclear Receptor HNF4 in Organ Pathophysiology

Dubois, V., Staels, B., Lefebvre, P., Verzi, M., & Eeckhoute, J. (2020) · Cells

Liver physiology and pathologyNuclear Receptors and Signaling

Cited by 63

Hepatic Molecular Signatures Highlight the Sexual Dimorphism of Nonalcoholic Steatohepatitis (NASH)

Vandel, J., Dubois‐Chevalier, J., Gheeraert, C., Derudas, B., Raverdy, V., Thuillier, D., Gaal, L., Francque, S., Pattou, F., Staels, B., et al. (2021) · Hepatology

Liver Disease Diagnosis and TreatmentAlcohol Consumption and Health Effects

Cited by 61

Maternal obesity programs increased leptin gene expression in rat male offspring via epigenetic modifications in a depot-specific manner

Lecoutre, S., Oger, F., Pourpe, C., Butruille, L., Marousez, L., Dickes-Coopman, A., Laborie, C., Guinez, C., Lesage, J., Vieau, D., et al. (2017) · Molecular Metabolism

Birth, Development, and HealthEpigenetics and DNA Methylation

Cited by 49

Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver

Dubois, V., Gheeraert, C., Vankrunkelsven, W., Dubois‐Chevalier, J., Dehondt, H., Bobowski‐Gerard, M., Vinod, M., Zummo, F. P., Güiza, F., Ploton, M., et al. (2020) · Molecular Systems Biology

Liver physiology and pathologyEndoplasmic Reticulum Stress and Disease

Cited by 46

The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Dubois-Chevalier, J., Dubois, V., Dehondt, H., Mazrooei, P., Mazuy, C., Sérandour, A. A., Gheeraert, C., Guillaume, P., Baugé, E., Derudas, B., et al. (2017) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 29

An extended transcription factor regulatory network controls hepatocyte identity

Dubois‐Chevalier, J., Gheeraert, C., Berthier, A., Boulet, C., Dubois, V., Guille, L., Fourcot, M., Marot, G., Gauthier, K., Dubuquoy, L., et al. (2023) · EMBO Reports

Liver physiology and pathologyGene Regulatory Network Analysis

Cited by 6