Zhang, Kai

Expanded encyclopaedias of DNA elements in the human and mouse genomes

The ENCODE Project Consortium, Abascal, F., Acosta, R., Addleman, N. J., Adrian, J., Afzal, V., Ai, R., Aken, B., Akiyama, J. A., Jammal, O. A., et al. (2020) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 2,378

Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours

Milner, J. J., Toma, C., Yu, B., Zhang, K., Omilusik, K., Phan, A. T., Wang, D., Getzler, A. J., Nguyen, T., Crotty, S., et al. (2017) · Nature

T-cell and B-cell ImmunologyCancer Immunotherapy and Biomarkers

Cited by 677

A single-cell atlas of chromatin accessibility in the human genome

Zhang, K., Hocker, J. D., Miller, M., Hou, X., Chiou, J., Poirion, O. B., Qiu, Y., Li, Y. E., Gaulton, K. J., Wang, A., et al. (2021) · Cell

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 502

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

Fang, R., Preissl, S., Li, Y., Hou, X., Lucero, J., Wang, X., Motamedi, A., Shiau, A. K., Zhou, X., Xie, F., et al. (2021) · Nature Communications

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 455

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

Li, Y. E., Preissl, S., Hou, X., Zhang, Z., Zhang, K., Fang, R., Qiu, Y., Poirion, O., Li, B., Liu, H., et al. (2020) · Nature

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 187

A fast, scalable and versatile tool for analysis of single-cell omics data

Zhang, K., Zemke, N. R., Armand, E. J., & Ren, B. (2024) · Nature Methods

Single-cell and spatial transcriptomicsCell Image Analysis Techniques

Cited by 185

An atlas of gene regulatory elements in adult mouse cerebrum

Li, Y. E., Preissl, S., Hou, X., Zhang, Z., Zhang, K., Qiu, Y., Poirion, O. B., Li, B., Chiou, J., Liu, H., et al. (2021) · Nature

Genomics and Chromatin DynamicsSingle-cell and spatial transcriptomics

Cited by 185

Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers

Fan, S., Tang, J., Li, N., Zhao, Y., Ai, R., Zhang, K., Wang, M., Du, W., & Wang, W. (2019) · npj Genomic Medicine

Epigenetics and DNA MethylationCancer Genomics and Diagnostics

Cited by 48

Revealing the Barriers of Language Agents in Planning

Xie, J., Zhang, K., Chen, J., Yuan, S., Zhang, K., Zhang, Y., Li, L., & Xiao, Y. (2025) · Proceedings of the 2025 Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies (Volume 1: Long Papers)

Natural Language Processing TechniquesSpeech and dialogue systems

Cited by 11