Kim, Donghyuk

Network Context and Selection in the Evolution to Enzyme Specificity

Nam, H., Lewis, N. E., Lerman, J. A., Lee, D.-H., Chang, R. L., Kim, D., & Palsson, B. O. (2012) · Science

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 277

Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655

Seo, S. W., Kim, D., Szubin, R., & Palsson, B. O. (2015) · Cell Reports

Bacterial Genetics and BiotechnologyGene Regulatory Network Analysis

Cited by 237

Multi-omic data integration enables discovery of hidden biological regularities

Ebrahim, A., Brunk, E., Tan, J., O'Brien, E. J., Kim, D., Szubin, R., Lerman, J. A., Lechner, A., Sastry, A., Bordbar, A., et al. (2016) · Nature Communications

Bioinformatics and Genomic NetworksMicrobial Metabolic Engineering and Bioproduction

Cited by 155

Design of synthetic promoters for cyanobacteria with generative deep-learning model

Seo, E., Choi, Y.-N., Shin, Y. R., Kim, D., & Lee, J. W. (2023) · Nucleic Acids Research

Microbial Metabolic Engineering and BioproductionGenomics and Chromatin Dynamics

Cited by 61

The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets

Gao, Y., Bang, I., Seif, Y., Kim, D., & Palsson, B. O. (2023) · Nucleic Acids Research

Bacterial Genetics and BiotechnologyEscherichia coli research studies

Cited by 14