Jones, Steven J. M.

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Hoffman, B. G., Robertson, G., Zavaglia, B., Beach, M., Cullum, R., Lee, S., Soukhatcheva, G., Li, L., Wederell, E. D., Thiessen, N., et al. (2010) · Genome Research

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

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Hippo Signaling Influences HNF4A and FOXA2 Enhancer Switching during Hepatocyte Differentiation

Alder, O., Cullum, R., Lee, S., Kan, A. C., Wei, W., Yi, Y., Garside, V. C., Bilenky, M., Griffith, M., Morrissy, A. S., et al. (2014) · Cell Reports

Hippo pathway signaling and YAP/TAZGenomics and Chromatin Dynamics

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Application of a neural network whole transcriptome-based pan-cancer method for diagnosis of primary and metastatic cancers

Grewal, J. K., Tessier-Cloutier, B., Jones, M., Gakkhar, S., Ma, Y., Moore, R., Mungall, A. J., Zhao, Y., Taylor, M. D., Gelmon, K., et al. (2019) · JAMA Network Open

Cancer Diagnosis and TreatmentGene expression and cancer classification

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A regulatory toolbox of MiniPromoters to drive selective expression in the brain

Portales-Casamar, E., Swanson, D. J., Liu, L., Leeuw, C. N. D., Banks, K. G., Ho Sui, S. J., Fulton, D. L., Ali, J., Amirabbasi, M., Arenillas, D. J., et al. (2010) · Proceedings of the National Academy of Sciences

CRISPR and Genetic EngineeringAnimal Genetics and Reproduction

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rAAV-compatible MiniPromoters for restricted expression in the brain and eye

de Leeuw, C. N., Korecki, A. J., Berry, G. E., Hickmott, J. W., Lam, S. L., Lengyell, T. C., Bonaguro, R. J., Borretta, L. J., Chopra, V., Chou, A. Y., et al. (2016) · Molecular Brain

Virus-based gene therapy researchRNA Interference and Gene Delivery

Cited by 76

SOX9 modulates the expression of key transcription factors required for heart valve development

Garside, V. C., Cullum, R., Alder, O., Lu, D. Y., Vander Werff, R., Bilenky, M., Zhao, Y., Jones, S. J. M., Marra, M. A., Underhill, T. M., et al. (2015) · Development

Congenital heart defects researchDevelopmental Biology and Gene Regulation

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A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)

Hou, J., Charters, A. M., Lee, S. C., Zhao, Y., Wu, M. K., Jones, S. J., Marra, M. A., & Hoodless, P. A. (2007) · BMC Developmental Biology

Developmental Biology and Gene RegulationPluripotent Stem Cells Research

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ChAsE: chromatin analysis and exploration tool

Younesy, H., Nielsen, C. B., Lorincz, M. C., Jones, S. J. M., Karimi, M. M., & Möller, T. (2016) · Bioinformatics

Genomics and Chromatin DynamicsData Visualization and Analytics

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Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines

Khattra, J., Delaney, A. D., Zhao, Y., Siddiqui, A., Asano, J., McDonald, H., Pandoh, P., Dhalla, N., Prabhu, A.-L., Ma, K., et al. (2007) · Genome Research

Genomics and Phylogenetic StudiesGene expression and cancer classification

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Genome-wide microRNA and messenger RNA profiling in rodent liver development implicates mir302b and mir20a in repressing transforming growth factor-beta signaling

Wei, W., Hou, J., Alder, O., Ye, X., Lee, S., Cullum, R., Chu, A., Zhao, Y., Warner, S. M., Knight, D. A., et al. (2013) · Hepatology

MicroRNA in disease regulationDevelopmental Biology and Gene Regulation

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A distributed whole genome sequencing benchmark study

Corbett, R. D., Eveleigh, R., Whitney, J., Barai, N., Bourgey, M., Chuah, E., Johnson, J., Moore, R. A., Moradin, N., Mungall, K. L., et al. (2020) · Frontiers in Genetics

Genomics and Phylogenetic StudiesGenomics and Rare Diseases

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