Batzoglou, Serafim

Initial sequencing and analysis of the human genome

International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature

Genomics and Phylogenetic StudiesGenetic Associations and Epidemiology

Cited by 24,216

Predicting splicing from primary sequence with deep learning

Jaganathan, K., Kyriazopoulou Panagiotopoulou, S., McRae, J. F., Darbandi, S. F., Knowles, D., Li, Y. I., Kosmicki, J. A., Arbelaez, J., Cui, W., Schwartz, G. B., et al. (2019) · Cell

RNA Research and SplicingGenomics and Rare Diseases

Cited by 2,853

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., et al. (2012) · Genome Research

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 2,033

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++

Davydov, E. V., Goode, D. L., Sirota, M., Cooper, G. M., Sidow, A., & Batzoglou, S. (2010) · PLoS Computational Biology

Genomics and Phylogenetic StudiesGenomics and Chromatin Dynamics

Cited by 1,757

Distribution and intensity of constraint in mammalian genomic sequence

Cooper, G. M., Stone, E. A., Asimenos, G., Green, E. D., Batzoglou, S., & Sidow, A. (2005) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,359

LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA

Brudno, M., Do, C. B., Cooper, G. M., Kim, M. F., Davydov, E., Program, N. C. S., Green, E. D., Sidow, A., & Batzoglou, S. (2003) · Genome Research

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 1,115

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer

Quigley, D. A., Dang, H. X., Zhao, S. G., Lloyd, P., Aggarwal, R., Alumkal, J. J., Foye, A., Kothari, V., Perry, M. D., Bailey, A. M., et al. (2018) · Cell

Prostate Cancer Treatment and ResearchCancer Genomics and Diagnostics

Cited by 733

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Valouev, A., Johnson, D. S., Sundquist, A., Medina, C., Anton, E., Batzoglou, S., Myers, R. M., & Sidow, A. (2008) · Nature Methods

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 695

Extensive Variation in Chromatin States Across Humans

Kasowski, M., Kyriazopoulou-Panagiotopoulou, S., Grubert, F., Zaugg, J. B., Kundaje, A., Liu, Y., Boyle, A. P., Zhang, Q. C., Zakharia, F., Spacek, D. V., et al. (2013) · Science

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

Cited by 339

The landscape of tolerated genetic variation in humans and primates

Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A., Fiziev, P., Kuderna, L., et al. (2023) · Science

Genomics and Rare DiseasesGenetic Associations and Epidemiology

Cited by 183

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Kundaje, A., Kyriazopoulou-Panagiotopoulou, S., Libbrecht, M., Smith, C. L., Raha, D., Winters, E. E., Johnson, S. M., Snyder, M., Batzoglou, S., & Sidow, A. (2012) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 178

Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes

Cooper, G. M., Brudno, M., Stone, E. A., Dubchak, I., Batzoglou, S., & Sidow, A. (2004) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 134

Nanoparticle enrichment mass-spectrometry proteomics identifies protein-altering variants for precise pQTL mapping

Suhre, K., Venkataraman, G. R., Guturu, H., Halama, A., Stephan, N., Thareja, G., Sarwath, H., Motamedchaboki, K., Donovan, M. K. R., Siddiqui, A., et al. (2024) · Nature Communications

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 57

A genome-wide association study of mass spectrometry proteomics using a nanoparticle enrichment platform

Suhre, K., Chen, Q., Halama, A., Mendez, K., Dahlin, A., Stephan, N., Thareja, G., Sarwath, H., Guturu, H., Dwaraka, V. B., et al. (2025) · Nature Genetics

Genetic Associations and EpidemiologyAdvanced Proteomics Techniques and Applications

Cited by 14