Kelley, Ryan

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.

Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., & Salzberg, S. L. (2013) · Genome Biology

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 12,668

Integration of biological networks and gene expression data using Cytoscape

Cline, M. S., Smoot, M., Cerami, E., Kuchinsky, A., Landys, N., Workman, C., Christmas, R., Avila-Campilo, I., Creech, M., Gross, B., et al. (2007) · Nature Protocols

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 2,507

Systematic interpretation of genetic interactions using protein networks

Kelley, R., & Ideker, T. (2005) · Nature Biotechnology

Bioinformatics and Genomic NetworksFungal and yeast genetics research

Cited by 437

Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data

Bandyopadhyay, S., Kelley, R., Krogan, N. J., & Ideker, T. (2008) · PLoS Computational Biology

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 141