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Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first‐order phase transition
Abstract
A theory of equilibrium denaturation of proteins is suggested. According to this theory, a cornerstone of protein denaturation is disruption of tight packing of side chains in protein core. Investigation of this disruption is the object of this paper. It is shown that this disruption is an “all‐or‐none” transition (independent of how compact is the denatured state of a protein and independent of the protein–solvent interactions) because expansion of a globule must exceed some threshold to release rotational isomerization of side chains. Smaller expansion cannot produce entropy compensation of nonbonded energy loss; this is the origin of a free‐energy barrier (transition state) between the native and denatured states. The density of the transition state is so high that the solvent cannot penetrate into protein in this state. The results obtained in this paper make it possible to present in the following paper a general phase diagram of protein molecule in solution.
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Citations
Cites
Principles that Govern the Folding of Protein Chains
Anfinsen, C. B. (1973) · Science · doi:10.1126/science.181.4096.223 · Cited by 7,096
Cited by
Bayesian statistical analysis of protein side‐chain rotamer preferences
Dunbrack, R. L., & Cohen, F. E. (1997) · Protein Science · doi:10.1002/pro.5560060807 · Cited by 774
Protein Folding Theory: From Lattice to All-Atom Models
Mirny, L., & Shakhnovich, E. (2001) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.30.1.361 · Cited by 341
Self-citationHeteropolymer freezing and design: Towards physical models of protein folding
Pande, V. S., Grosberg, A. Y., & Tanaka, T. (2000) · Reviews of Modern Physics · doi:10.1103/revmodphys.72.259 · Cited by 284
Controlling Allosteric Networks in Proteins
Dokholyan, N. V. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00544 · Cited by 260
De novo and inverse folding predictions of protein structure and dynamics
Godzik, A., Kolinski, A., & Skolnick, J. (1993) · Journal of Computer-Aided Molecular Design · doi:10.1007/bf02337559 · Cited by 91
Metadata
- Authors
- Shakhnovich, E. I., & Finkelstein, A. V.
- Venue
- Biopolymers
- Publisher
- Wiley
- Published
- 1989-10
- Volume
- 28
- Issue
- 10
- Pages
- 1667-1680
- ISSN
- 0006-3525 (ISSN-L)
- 1097-0282
- OpenAlex
- W1974027664
- Cited by
- 286
- References
- 1
- FWCI
- 2.23
- Type
- journal article
- Language
- en
- Open access
- closed
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- Shakhnovich, E. I., & Finkelstein, A. V. (1989). Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first‐order phase transition. Biopolymers. https://doi.org/10.1002/bip.360281003
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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