Case/pseudocontrol analysis in genetic association studies: A unified framework for detection of genotype and haplotype associations, gene‐gene and gene‐environment interactions, and parent‐of‐origin effects

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2. A Functional IL22 Polymorphism (rs2227473) Is Associated with Predisposition to Childhood Cerebral Malaria
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5. Estimation and testing of gene–environment interactions in family-based association studies
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6. Differential Parental Transmission of Markers in BCL3 among Korean Cleft Case-parent Trios
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7. Folate Pathway Gene Polymorphisms, Maternal Folic Acid Use, and Risk of Childhood Acute Lymphoblastic Leukemia
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9. Genetic and Functional Evidence Implicating DLL1 as the Gene That Influences Susceptibility to Visceral Leishmaniasis at Chromosome 6q27
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13. Computational Intelligence in Bioinformatics: SNP/Haplotype Data in Genetic Association Study for Common Diseases
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14. Evidence of interaction between genes in the folate/homocysteine metabolic pathway in controlling risk of non‐syndromic oral cleft
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16. Increased Power for Detection of Parent-of-Origin Effects via the Use of Haplotype Estimation
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17. Quantitative trait association in parent offspring trios: Extension of case/pseudocontrol method and comparison of prospective and retrospective approaches
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18. Importance Measures for Epistatic Interactions in Case-Parent Trios
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23. Systematic Detection of Epistatic Interactions Based on Allele Pair Frequencies
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25. IRF6 polymorphisms in Mexican patients with non-syndromic cleft lip
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29. Epistasis between neurochemical gene polymorphisms and risk for ADHD
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30. Family-Based Association Study Between SLC2A1, HK1, and LEPR Polymorphisms With Myelomeningocele in Chile
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31. Imputation Without Doing Imputation: A New Method for the Detection of Non‐Genotyped Causal Variants
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32. An efficient gene–gene interaction test for genome-wide association studies in trio families
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33. Gene mapping of complex diseases - A comparison of methods from statistics informnation theory, and signal processing
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34. An easy‐to‐implement approach for analyzing case–control and case‐only studies assuming gene–environment independence and Hardy–Weinberg equilibrium
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36. Aggregated Genomic Data as Cohort-Specific Allelic Frequencies can Boost Variants and Genes Prioritization in Non-Solved Cases of Inherited Retinal Dystrophies
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37. Excess maternal transmission of markers in TCOF1 among cleft palate case‐parent trios from three populations
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38. Detection of Intergenerational Genetic Effects with Application to HLA-B Matching as a Risk Factor for Schizophrenia
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39. A New Method to Account for Missing Data in Case-Parent Triad Studies
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40. Detection of Fetomaternal Genotype Associations in Early-Onset Disorders: Evaluation of Different Methods and Their Application to Childhood Leukemia
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41. Family Based Studies and Genetic Epidemiology: Theory and Practice
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43. Using Case‐parent Triads to Estimate Relative Risks Associated with a Candidate Haplotype
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44. Genetic and functional evidence for a role for SLC11A1 in susceptibility to otitis media in early childhood in a Western Australian population
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45. Combining Disease Models to Test for Gene-Environment Interaction in Nuclear Families
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46. Direct Genetic Effects and Their Estimation From Matched Case‐Control Data
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47. Using offspring-parent triads to study complex traits: A tutorial based on orofacial clefts
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48. Genome-wide association studies: a powerful tool for neurogenomics
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49. On Combining Triads and Unrelated Subjects Data in Candidate Gene Studies: An Application to Data on Testicular Cancer
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50. Association and epistatic analysis of white matter related genes across the continuum schizophrenia and autism spectrum disorders: The joint effect of NRG1-ErbB genes
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51. Using parent‐offspring pairs and trios to estimate indirect genetic effects in education
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52. MSX1 gene polymorphisms in Mexican patients with non-syndromic cleft lip/palate
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53. Testing Haplotype-Environment Interactions Using Case-Parent Triads
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54. Incorporating Serotypes into Family Based Association Studies Using the MFG Test
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55. A conditional‐on‐exchangeable‐parental‐genotypes likelihood that remains unbiased at the causal locus under multiple‐affected‐sibling ascertainment
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56. Folate Pathway Gene Polymorphisms and Risk of Childhood Brain Tumors: Results from an Australian Case–Control Study
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57. Investigation of Parental Transmission of RUNX2 Single Nucleotide Polymorphism and Its Association with Nonsyndromic Cleft Lip with or Without Palate
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58. Estudio de asociación de base familiar entre polimorfismos de MTHFR y mielomeningocele en Chile
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59. Estimating genetic effect sizes under joint disease-endophenotype models in presence of gene-environment interactions
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60. POIROT: a powerful test for parent-of-origin effects in unrelated samples leveraging multiple phenotypes
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61. Investigation of the association between all-trans-retinol dehydrogenase (RDH8) polymorphisms and high myopia in Chinese
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62. Detecting Interactions in Association Studies by Using Simple Allele Recoding
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63. Correction: A Powerful Test of Parent-of-Origin Effects for Quantitative Traits Using Haplotypes
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69. Benchmarking statistical methods for analyzing parent–child dyads in genetic association studies
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72. Population stratification bias: more widespread than previously thought.
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73. Regression-based approach for testing the association between multi-region haplotype configuration and complex trait
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75. A gene‐based association test of interactions for maternal–fetal genotypes identifies genes associated with nonsyndromic congenital heart defects
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77. Haplotype association analyses in resources of mixed structure using Monte Carlo testing
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78. Estimating haplotype relative risks in complex disease from unphased SNPs data in families using a likelihood adjusted for ascertainment
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