Efficient multilocus association testing for whole genome association studies using localized haplotype clustering

Cited by (164)

Items 101–164 of 164

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9. A haplotype inference algorithm for trios based on deterministic sampling
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10. Identity‐By‐Descent Mapping Using Multi‐Individual IBD With Genome‐Wide Multiple Testing Adjustment
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11. Probabilistic Graphical Models for Next-generation Genomics and Genetics
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12. A method combining a random forest-based technique with the modeling of linkage disequilibrium through latent variables, to run multilocus genome-wide association studies
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14. Practical Implications of Coalescent Theory
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15. A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels
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16. Haplotype Sharing Methods
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17. Assessing Gene-Environment Interactions in Genome-Wide Association Studies: Statistical Approaches
    RTI International, Durham, NC (United States), Philip Chester Cooley, Robert F. Clark, Ralph E. Folsom · 2014
18. Two molecular measures of relatedness based on haplotype sharing
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19. Modelling discrete longitudinal data using acyclic probabilistic finite automata
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20. Modelling and visualizing fine-scale linkage disequilibrium structure
    David Edwards · 2013 · BMC Bioinformatics
21. RPASE: Individual‐based allele‐specific expression detection without prior knowledge of haplotype phase
    Mi Wang, Severin Uebbing, Y. Pawitan, D. Scofield · 2018 · Molecular Ecology Resources
22. Determinant-based grouping of SNPs and its application for detecting disease-associated genomic loci
    Gennady V. Khvorykh, Хрунин Андрей Владимирович · 2025 · NAR Genomics and Bioinformatics
23. Using haplotypes for the prediction of allelic identity to fine-map QTL: characterization and properties
    Laval Julien Jacquin, Jean-Michel Elsen, Hélène Gilbert · 2014 · Genetics Selection Evolution
24. A ν-support vector regression based approach for predicting imputation quality
    Yi-Hung Huang, John P. Rice, Scott F. Saccone, José Luis Ambite, Yigal Arens, Jay A. Tischfield, Chun-Nan Hsu · 2012 · BMC Proceedings
25. Automated construction and testing of multi-locus gene–gene associations
    Ryan Abo, Stacey Knight, Alun Thomas, Nicola J. Camp · 2010 · Bioinformatics
26. Developing and validating a comprehensive polygenic risk score to enhance keratoconus risk prediction
    Weixiong He, Urmo Võsa, Teele Palumaa, Jue‐Sheng Ong, Santiago Díaz‐Torres, Alex William Hewitt, David Anthony Mackey, Puya Gharahkhani, Tõnu Esko, Stuart MacGregor · 2024 · Human Molecular Genetics
27. Genome-wide association study of IgG1 responses to the choline-binding protein PspC of Streptococcus pneumoniae
    Denise R. Anderson, Michaela Fakiola, Belinda J. Hales, Craig Edward Pennell, Wayne Robert Thomas, Jenefer Mary Blackwell · 2015 · Genes and Immunity
28. The price of sequencing the livestock genomics
    Marcin Pszczoła · 2023 · Peer Community In Animal Science
29. Rule-based induction method for haplotype comparison and identification of candidate disease loci
    Sirkku Karinen, Silva Saarinen, Rainer Lehtonen, Pasi M. A. Rastas, Pia Vahteristo, Lauri A. Aaltonen, Sampsa Hautaniemi · 2012 · Genome Medicine
30. Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species
    Yang Meng Tian, Shuyu Liu, Pär K. Ingvarsson, Dandan Zhao, Li Wang, Baoerjiang Abuduhamiti, Jinfeng Cai, Zhiqiang Wu, Jianguo Zhang, Zhaoshan Wang · 2022 · Journal of Systematics and Evolution
31. Genome-wide association analysis of host genotype and plastic wing morphological variation of an endoparasitoid wasp Asobara japonica (Hymenoptera: Braconidae)
    Shinpei Yamashita, Tomohiro Takigahira, Kazuo H. Takahashi · 2018 · Genetica
32. Multilocus analysis of GAW15 NARAC chromosome 18 case-control data
    Sharon R. Browning, Jessica Thomas · 2007 · BMC Proceedings
33. Genome-wide association and epistasis studies of Sclerotinia sclerotiorum resistance in soybean
    Tara C. Moellers · 2016
34. Combining phenomic and genomic selection for pea breeding improvement
    Anthony Klein, Virgilio Freitas, Abdou Rahmane Wade, Grégoire Aubert, Myriam Huart, Michaël Touratier, Jennifer Régulier, Jean-François Herbommez, Catherine Kraut, Guillaume Roullet et al. · 2026 · The Plant Phenome Journal
35. Efficiency of haplotype-based methods to fine-map QTLs and embryonic lethal variants affecting fertility: Illustration with a deletion segregating in Nordic Red cattle
    Naveen Kumar Kadri, Goutam Sahana, Bernt Guldbrandtsen, Mogens Sandø Lund, Tom Druet · 2014 · Livestock Science
36. Modeling Linkage Disequilibrium and Performing Association Studies through Probabilistic Graphical Models: a Visiting Tour of Recent Advances
    Christine Sinoquet, Raphaël Mourad · 2014
37. Computational methods for augmenting association-based gene mapping
    Lauri Eronen · 2013 · Työväentutkimus Vuosikirja
38. Some context-specific graphical models for discrete longitudinal data
    David Edwards, Smitha Ankinakatte · 2013 · arXiv (Cornell University)
39. ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing
    Kazuharu Misawa, Naoyuki Kamatani · 2010 · Source Code for Biology and Medicine
40. Gene x lifestyle interactions in type 2 diabetes mellitus and related traits
    Ema C. Brito · 2010 · DiVA at Umeå University (Umeå University)
41. Computational methods to analyze molecular determinants behind phenotypes
    Sirkku Karinen · 2013 · Työväentutkimus Vuosikirja
42. A novel tool for individual haplotype inference using mixed data
    Chen-Pang Lin, Cathy S.J. Fann · 2009 · Journal of Biomedical Science
43. Haplotype Inference through Sequential Monte Carlo
    Alexandros Iliadis · 2013
44. Human Genetics of Diabetic Cardiovascular Complications
    Zihui Tang, Ke‐Qin Zhang · 2014 · Journal of Diabetes Metabolic Disorders & Control
45. Latent Forests to Model Genetical Data for the Purpose of Multilocus Genome-Wide Association Studies. Which Clustering Should Be Chosen?
    Duc-Thanh Phan, Philippe Leray, Christine Sinoquet · 2015 · Communications in computer and information science
46. Securing the use of existing sample collections for future human genetic research
    George Kanoungi, Peter Nürnberg, Michael Nothnagel · 2017 · European Journal of Human Genetics
47. Mapping by Admixture Linkage Disequilibrium: New Criteria & Algorithms
    Sivan Bercovici, Dan Geiger · 2010
48. Reducing pervasive false positive identical-by-descent segments detected by large-scale pedigree analysis
    Durand, Eric Y., Nicholas Eriksson, Cory Y. McLean · 2013 · arXiv (Cornell University)
49. Genotype Imputation
    Jonathan Marchini · 2010 · Elsevier eBooks
50. Optimisation of phasing: towards improved haplotype-based genetic investigations
    Ziad Al Bkhetan · 2020 · Minerva Access (University of Melbourne)
51. Genetics of Multiple Sclerosis
    Virpi Leppä · 2013 · Työväentutkimus Vuosikirja
52. Assessing Gene-Environment Interactions in Genome-Wide Association Studies (GWAS): Statistical Approaches
    Philip Chester Cooley, Robert F. Clark, Ralph E. Folsom · 2016
53. Design and Analysis Issues in Gene and Environment Studies
    Chen-Yu Liu, Arnab Maity, Xihong Lin, Robert O. Wright · 2013 · Apple Academic Press eBooks
54. Genome-wide association study dissection of candidate genes for fleece traits in Inner Mongolia cashmere goats based on whole-genome resequencing data
    Huanfeng Yao, Silang Zhu, Xu Rigan, E′erke Ale′de, Yongbin Liu, Jinquan Li, Qi Lv, Ruijun Wang, Yanjun Zhang, Rui Su et al. · 2025 · Animal Bioscience
55. Additional file 4 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2023 · Figshare
56. Additional file 5 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2023 · Figshare
57. Additional file 6 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2024 · Figshare
58. Additional file 3 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2023 · Figshare
59. Additional file 1 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2023 · Figshare
60. Additional file 7 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2024 · Figshare
61. Additional file 2 of Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines
    Mitra Serajazari, Davoud Torkamaneh, Emily Gordon, Lee, Elizabeth, Booker, Helen, Karl Peter Pauls, Alireza Navabi · 2023 · Figshare
62. La consanguinité à l'ère du génome haut-débit : estimations et applications
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63. Approche multilocus du génome dans les modèles de génétique des populations
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64. Phenotypic trait-driven core set development and t-SNE visualization of diversity in fenugreek (Trigonella foenum-graecum l.) germplasm
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