Cited by 190Wnt/β-catenin signaling in development and cancerLiver physiology and pathologyColorectal Cancer Treatments and Studies

T-cell factor 4 and β-catenin chromatin occupancies pattern zonal liver metabolism in mice

Open access
Gougelet, Angélique, Torre, Cyril, Veber, Philippe, Sartor, Chiara, Bachelot, Laura, Denechaud, Pierre-Damien, Godard, Cécile, Moldes, Marthe +9 more·2014·Hepatology

Abstract

β-catenin signaling can be both a physiological and oncogenic pathway in the liver. It controls compartmentalized gene expression, allowing the liver to ensure its essential metabolic function. It is activated by mutations in 20%-40% of hepatocellular carcinomas (HCCs) with specific metabolic features. We decipher the molecular determinants of β-catenin-dependent zonal transcription using mice with β-catenin-activated or -inactivated hepatocytes, characterizing in vivo their chromatin occupancy by T-cell factor (Tcf)−4 and β-catenin, transcriptome, and metabolome. We find that Tcf-4 DNA bindings depend on β-catenin. Tcf-4/β-catenin binds Wnt-responsive elements preferentially around β-catenin-induced genes. In contrast, genes repressed by β-catenin bind Tcf-4 on hepatocyte nuclear factor 4 (Hnf-4)-responsive elements. β-Catenin, Tcf-4, and Hnf-4α interact, dictating β-catenin transcription, which is antagonistic to that elicited by Hnf-4α. Finally, we find the drug/bile metabolism pathway to be the one most heavily targeted by β-catenin, partly through xenobiotic nuclear receptors. Conclusions : β-catenin patterns the zonal liver together with Tcf-4, Hnf-4α, and xenobiotic nuclear receptors. This network represses lipid metabolism and exacerbates glutamine, drug, and bile metabolism, mirroring HCCs with β-catenin mutational activation. (Hepatology 2014;59:2344–2357)

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1002/hep.26924

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Indirect regulation of hepatocyte identity is mediated by competition of HNF4α and β-catenin for binding to TCF. Without nuclear β-catenin, the HNF4α/TCF complex promotes periportal gene expression, whereas nuclear translocation of β-catenin forms a β-catenin/TCF complex that favours pericentral gene expression.

    “This indirect regulation of hepatocyte identity is mediated by the competition of HNF4α and β-catenin for binding to TCF. Without nuclear β-catenin, the HNF4α/TCF complex promotes periportal gene expression, whereas nuclear translocation of β-catenin forms a β-catenin/TCF complex that favours pericentral gene expression.52”

    From Distinct hepatocyte identities in liver homeostasis and regeneration (2023) · cites this paper as [52]

    Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

No citation lists for this paper

No citation lists for this paper yet — checked again daily.

References 40 · Cited by 190

Research works printed but not linked: 34

  1. Jungermann K, Kietzmann T. Zonation of parenchymal and nonparen- chymal metabolism in liver. Annu Rev Nutr 1996;16:179-203.
  2. Torre C, Perret C, Colnot S. Molecular determinants of liver zonation. Prog Mol Biol Transl Sci 2010;97:127-150.
  3. Benhamouche S, Decaens T, Godard C, Chambrey R, Rickman DS, Moinard C, et al. Apc tumor suppressor gene is the "zonation-keeper" of mouse liver. Dev Cell 2006;10:759-770.
  4. Sekine S, Lan BY, Bedolli M, Feng S, Hebrok M. Liver-specific loss of beta-catenin blocks glutamine synthesis pathway activity and cyto- chrome p450 expression in mice. HEPATOLOGY 2006;43:817-825.
  5. Cadigan KM, Waterman ML. TCF/LEFs and Wnt signaling in the nucleus. Cold Spring Harb Perspect Biol 2012;4:a007906.
  6. Colnot S, Decaens T, Niwa-Kawakita M, Godard C, Hamard G, Kahn A, et al. Liver-targeted disruption of Apc in mice activates beta-catenin signaling and leads to hepatocellular carcinomas. Proc Natl Acad Sci U S A 2004;101:17216-17221.
  7. Audard V, Grimber G, Elie C, Radenen B, Audebourg A, Letourneur F, et al. Cholestasis is a marker for hepatocellular carcinomas displaying beta-catenin mutations. J Pathol 2007;212:345-352.
  8. Brault V, Moore R, Kutsch S, Ishibashi M, Rowitch DH, McMahon AP, et al. Inactivation of the beta-catenin gene by Wnt1-Cre-mediated deletion results in dramatic brain malformation and failure of craniofa- cial development. Development 2001;128:1253-1264.
  9. Tannour-Louet M, Porteu A, Vaulont S, Kahn A, Vasseur-Cognet M. A tamoxifen-inducible chimeric Cre recombinase specifically effective in the fetal and adult mouse liver. HEPATOLOGY 2002;35:1072-1081.
  10. Nelson JD, Denisenko O, Bomsztyk K. Protocol for the fast chromatin immunoprecipitation (ChIP) method. Nat Protoc 2006;1:179-185.
  11. Boj SF, van Es JH, Huch M, Li VS, Jos e A, Hatzis P, et al. Diabetes risk gene and Wnt effector Tcf7l2/TCF4 controls hepatic response to perinatal and adult metabolic demand. Cell 2012;151:1595-1607.
  12. Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol 2012;13:418.
  13. Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 2010;107:21931-21936.
  14. Decaens T, Godard C, de Reynies A, Rickman DS, Tronche F, Couty JP, et al. Stabilization of beta-catenin affects mouse embryonic liver growth and hepatoblast fate. HEPATOLOGY 2008;47:247-258.
  15. Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L. seqMINER: an integrated ChIP-seq data interpretation plat- form. Nucleic Acids Res 2011;39:e35.
  16. Anson M, Crain-Denoyelle AM, Baud V, Chereau F, Gougelet A, Terris B, et al. Oncogenic beta-catenin triggers an inflammatory response that determines the aggressiveness of hepatocellular carcinoma in mice. J Clin Invest 2012;122:586-599.
  17. Holloway MG, Miles GD, Dombkowski AA, Waxman DJ. Liver-spe- cific hepatocyte nuclear factor-4alpha deficiency: greater impact on gene expression in male than in female mouse liver. Mol Endocrinol 2008;22:1274-1286.
  18. Schmidt D, Wilson MD, Ballester B, Schwalie PC, Brown GD, Marshall A, et al. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 2010;328:1036-1040.
  19. Cattin AL, Le Beyec J, Barreau F, Saint-Just S, Houllier A, Gonzalez FJ, et al. Hepatocyte nuclear factor 4alpha, a key factor for homeosta- sis, cell architecture, and barrier function of the adult intestinal epithe- lium. Mol Cell Biol 2009;29:6294-6308.
  20. Beilke LD, Aleksunes LM, Holland RD, Besselsen DG, Beger RD, Klaassen CD, Cherrington NJ. Constitutive androstane receptor- mediated changes in bile acid composition contributes to hepatoprotec- tion from lithocholic acid-induced liver injury in mice. Drug Metab Dispos 2009;37:1035-1045.
  21. Le Martelot G, Claudel T, Gatfield D, Schaad O, Kornmann B, Lo Sasso G, et al. REV-ERBalpha participates in circadian SREBP signal- ing and bile acid homeostasis. PLoS Biol 2009;7:e1000181.
  22. Mosimann C, Hausmann G, Basler K. Beta-catenin hits chromatin: regulation of Wnt target gene activation. Nat Rev Mol Cell Biol 2009; 10:276-286.
  23. Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA. Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells. Genes Dev 2008;22:746-755.
  24. Affolter M, Pyrowolakis G, Weiss A, Basler K. Signal-induced repres- sion: the exception or the rule in developmental signaling? Dev Cell 2008;15:11-22.
  25. Odom DT, Zizlsperger N, Gordon DB, Bell GW, Rinaldi NJ, Murray HL, et al. Control of pancreas and liver gene expression by HNF tran- scription factors. Science 2004;303:1378-1381.
  26. Stanulovic VS, Kyrmizi I, Kruithof-de Julio M, Hoogenkamp M, Vermeulen JL, Ruijter JM, et al. Hepatic HNF4alpha deficiency indu- ces periportal expression of glutamine synthetase and other pericentral enzymes. HEPATOLOGY 2007;45:433-444.
  27. Colletti M, Cicchini C, Conigliaro A, Santangelo L, Alonzi T, Pasquini E, et al. Convergence of Wnt signaling on the HNF4alpha-driven tran- scription in controlling liver zonation. Gastroenterology 2009;137:660- 672.
  28. Kaestner KH. In the zone: how a hepatocyte knows where it is. Gastroenterology 2009;137:425-427.
  29. Torre C, Perret C, Colnot S. Transcription dynamics in a physiological process: beta-catenin signaling directs liver metabolic zonation. Int J Biochem Cell Biol 2011;43:271-278.
  30. Yamagata K, Furuta H, Oda N, Kaisaki PJ, Menzel S, Cox NJ, et al. Mutations in the hepatocyte nuclear factor-4alpha gene in maturity-onset diabetes of the young (MODY1). Nature 1996;384: 458-460.
  31. Chafey P, Finzi L, Boisgard R, Cauzac M, Clary G, Broussard C, et al. Proteomic analysis of beta-catenin activation in mouse liver by DIGE analysis identifies glucose metabolism as a new target of the Wnt path- way. Proteomics 2009;9:3889-3900.
  32. Behari J, Yeh TH, Krauland L, Otruba W, Cieply B, Hauth B, et al. Liver-specific beta-catenin knockout mice exhibit defective bile acid and cholesterol homeostasis and increased susceptibility to diet-induced steatohepatitis. Am J Pathol 2010;176:744-753.
  33. Ning BF, Ding J, Yin C, Zhong W, Wu K, Zeng X, et al. Hepatocyte nuclear factor 4 alpha suppresses the development of hepatocellular car- cinoma. Cancer Res 2010;70:7640-7651.
  34. Braeuning A, Schwarz M. beta-Catenin as a multilayer modulator of zonal cytochrome P450 expression in mouse liver. Biol Chem 2010; 391:139-148.

Authors
Gougelet, A., Torre, C., Veber, P., Sartor, C., Bachelot, L., Denechaud, P.-D., Godard, C., Moldes, M., Burnol, A.-F., Dubuquoy, C., Terris, B., Guillonneau, F., Ye, T., Schwarz, M., Braeuning, A., Perret, C., & Colnot, S.
Affiliations
  • Centre National de la Recherche Scientifique (FR)
  • University of Tübingen (DE)
Corresponding author
Colnot, Sabine
Venue
Hepatology
Published
2014-06
Volume
59
Issue
6
Pages
2344-2357
ISSN
0270-9139 (ISSN-L)
OpenAlex
W2069092694
Cited by
190
References
40
Citations by year
2026: 6 · 2025: 20 · 2024: 25 · 2023: 21 · 2022: 9 · 2021: 13 · 2020: 16 · 2019: 18 · 2018: 12 · 2017: 15 · 2016: 14 · 2015: 12 · 2014: 8 · 2013: 1
FWCI
5.22
Type
journal article
Language
en
Open access
Locations
  • Hepatology (publishedVersion)
  • PubMed (publishedVersion)
  • HAL (submittedVersion)
Funders
Agence Nationale de la Recherche (ANR-11-LABX-0071, ANR-11-IDEX-0005)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
  • Health Sciences › Medicine › Hepatology › Liver physiology and pathology
  • Health Sciences › Medicine › Oncology › Colorectal Cancer Treatments and Studies
Keywords
β-catenin signaling, TCF4, HNF4α, HNF4, drug metabolism, bile metabolism, lipid metabolism, hepatocellular carcinoma, chromatin occupancy, transcriptional repression
MeSH terms
Animals, Chromatin, Humans, Liver, Liver Neoplasms, Male, Mice, Knockout, Receptor Cross-Talk, Hepatocytes, Lipid Metabolism, beta Catenin, Mice, Hepatocyte Nuclear Factor 4, Gene Regulatory Networks, Transcription Factor 7-Like 2 Protein

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review