The DOI matches its Crossref record; 16 of the 16 references it cites were found in a registry or an index.
Oncotator: Cancer Variant Annotation Tool
Open accessAbstract
Oncotator is a tool for annotating genomic point mutations and short nucleotide insertions/deletions (indels) with variant- and gene-centric information relevant to cancer researchers. This information is drawn from 14 different publicly available resources that have been pooled and indexed, and we provide an extensible framework to add additional data sources. Annotations linked to variants range from basic information, such as gene names and functional classification (e.g. missense), to cancer-specific data from resources such as the Catalogue of Somatic Mutations in Cancer (COSMIC), the Cancer Gene Census, and The Cancer Genome Atlas (TCGA). For local use, Oncotator is freely available as a python module hosted on Github (https://github.com/broadinstitute/oncotator). Furthermore, Oncotator is also available as a web service and web application at http://www.broadinstitute.org/oncotator/.
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Cites
A method and server for predicting damaging missense mutations.
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Self-citationComprehensive molecular characterization of human colon and rectal cancer
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Self-citationA map of human genome variation from population-scale sequencing.
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Self-citationGENCODE: The reference human genome annotation for The ENCODE Project
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Cited by
Charoentong, P., Finotello, F., Angelova, M., Mayer, C., Efremova, M., Rieder, D., Hackl, H., & Trajanoski, Z. (2017) · Cell Reports · doi:10.1016/j.celrep.2016.12.019 · Cited by 5,041
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
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Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma
Hugo, W., Zaretsky, J. M., Sun, L., Song, C., Moreno, B. H., Hu-Lieskovan, S., Berent-Maoz, B., Pang, J., Chmielowski, B., Cherry, G., et al. (2016) · Cell · doi:10.1016/j.cell.2016.02.065 · Cited by 3,448
Pan-cancer analysis of whole genomes
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Self-citationDefining a Cancer Dependency Map
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Metadata
- Authors
- Ramos, A. H., Lichtenstein, L., Gupta, M., Lawrence, M. S., Pugh, T. J., Saksena, G., Meyerson, M., & Getz, G.
- Venue
- Human Mutation
- Publisher
- Wiley
- Published
- 2015-03-16
- Volume
- 36
- Issue
- 4
- Pages
- E2423-E2429
- ISSN
- 1059-7794 (ISSN-L)
- OpenAlex
- W2065121554
- Cited by
- 501
- References
- 16
- FWCI
- 17.47
- Type
- journal article
- Language
- en
- Open access
- green
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