The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
User‐friendly semiautomated assembly of accurate image mosaics in microscopy
Open accessAbstract
We present a semiautomated software solution to the problem of extending the lateral field of view of a classical microscope. The initial requirements are a set of overlapping images, along with their user‐provided coarse mosaic. Our solution then refines this initial mosaic in a fully automatic fashion. We rely on a highly accurate registration engine to perform the pairwise registration of the individual images, and on an efficient strategy to minimize the amount of computations while maintaining the highest possible global quality. We describe these ingredients, which we make available as a free multiplatform user‐friendly software package. We also highlight why and how the specific aspects of the present microscopy application differ from those encountered while creating more common mosaics such as panoramas. Finally, we present experimental results that illustrate and validate our method on a real biological sample. We conclude by showing that we are able to reach subpixel accuracy. Microsc. Res. Tech., 2007. © 2006 Wiley‐Liss, Inc.
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Cites
Bundle Adjustment — A Modern Synthesis
Triggs, B., McLauchlan, P. F., Hartley, R. I., & Fitzgibbon, A. W. (2000) · Lecture Notes in Computer Science · doi:10.1007/3-540-44480-7_21 · Cited by 3,988
Cited by
Martinod, K., Demers, M., Fuchs, T. A., Wong, S. L., Brill, A., Gallant, M., Hu, J., Wang, Y., & Wagner, D. D. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1301059110 · Cited by 532
Li, A., Figueroa, S., Jiang, T.-X., Wu, P., Widelitz, R., Nie, Q., & Chuong, C.-M. (2017) · Nature Communications · doi:10.1038/ncomms14139 · Cited by 455
Resolution of inflammation by interleukin-9-producing type 2 innate lymphoid cells
Rauber, S., Luber, M., Weber, S., Maul, L., Soare, A., Wohlfahrt, T., Lin, N.-Y., Dietel, K., Bozec, A., Herrmann, M., et al. (2017) · Nature Medicine · doi:10.1038/nm.4373 · Cited by 282
Peptidylarginine deiminase 4 promotes age-related organ fibrosis
Martinod, K., Witsch, T., Erpenbeck, L., Savchenko, A., Hayashi, H., Cherpokova, D., Gallant, M., Mauler, M., Cifuni, S. M., & Wagner, D. D. (2017) · Journal of Experimental Medicine · doi:10.1084/jem.20160530 · Cited by 218
A survey of methods for 3D histology reconstruction
Pichat, J., Iglesias, J. E., Yousry, T., Ourselin, S., & Modat, M. (2018) · Medical Image Analysis · doi:10.1016/j.media.2018.02.004 · Cited by 207
Metadata
- Authors
- Thévenaz, P., & Unser, M.
- Venue
- Microscopy Research and Technique
- Publisher
- Wiley
- Published
- 2006-11-28
- Volume
- 70
- Issue
- 2
- Pages
- 135-146
- ISSN
- 1059-910X (ISSN-L)
- 1097-0029
- OpenAlex
- W2132288860
- Cited by
- 303
- References
- 1
- FWCI
- 9.08
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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