Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

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Items 101–200 of 244

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5. Screening and identification of B cell epitopes of structural proteins of foot-and-mouth disease virus serotype Asia1
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6. Using random forest to classify linear B-cell epitopes based on amino acid properties and molecular features
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8. Functional, structural and epitopic prediction of hypothetical proteins of Mycobacterium tuberculosis H37Rv: An in silico approach for prioritizing the targets
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9. DRREP: deep ridge regressed epitope predictor
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10. Estimation and extraction of B‐cell linear epitopes predicted by mathematical morphology approaches
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11. B‐cell epitopes of antigenic proteins in Leishmania infantum: an in silico analysis
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12. Structural modeling and conserved epitopes prediction against SARS-COV-2 structural proteins for vaccine development
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13. An Overview of Bioinformatics Tools and Resources in Allergy
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14. Immunoproteomics: Current Technology and Applications
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15. In silico proteomic characterization of human epidermal growth factor receptor 2 (HER-2) for the mapping of high affinity antigenic determinants against breast cancer
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16. C 3 Mab-3: A Monoclonal Antibody for Mouse CC Chemokine Receptor 3 for Flow Cytometry
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17. Antigenic Determinants of the Bilobal Cockroach Allergen Bla g 2
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18. Towardsin silicodesign of epitope-based vaccines
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20. Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive
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21. Epitope Prediction Based on Random Peptide Library Screening: Benchmark Dataset and Prediction Tools Evaluation
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25. Inflammatory and Autoimmune Reactions in Atherosclerosis and Vaccine Design Informatics
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26. A Review of Important Discontinuous B-Cell Epitope Prediction Tools
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27. Linear B-cell epitopes prediction using bagging based proposed ensemble model
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28. In silicomethods for predicting T-cell epitopes: Dr Jekyll or Mr Hyde?
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29. Screening and identification of B-cell epitopes within envelope protein of tembusu virus
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30. Computational Approaches and Challenges to Developing Universal Influenza Vaccines
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31. EpiScan: accurate high-throughput mapping of antibody-specific epitopes using sequence information
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32. Artificial-epitope mapping for CK-MB assay
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33. Linear B-cell epitope prediction for in silico vaccine design: a performance review of methods available via command-line interface
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34. DeepBCE: Evaluation of deep learning models for identification of immunogenic B-cell epitopes
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35. Antibody–antigen complex modelling in the era of immunoglobulin repertoire sequencing
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36. Organism-specific training improves performance of linear B-cell epitope prediction
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37. PEPOP 2.0: new approaches to mimic non-continuous epitopes
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38. Evaluation of spatial epitope computational tools based on experimentally-confirmed dataset for protein antigens
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39. Representation in the (Artificial) Immune System
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40. Coupling Graphs, Efficient Algorithms and B-Cell Epitope Prediction
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41. Identification of broadly neutralizing antibody epitopes in the HIV-1 envelope glycoprotein using evolutionary models
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42. Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information
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43. Development and Application of Computational Methods in Phage Display Technology
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44. A minimal model of peptide binding predicts ensemble properties of serum antibodies
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45. Design of multivalent-epitope vaccine models directed toward the world’s population against HIV-Gag polyprotein: Reverse vaccinology and immunoinformatics
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46. A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
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47. Two highly similar LAEDDTNAQKT and LTDKIGTEI epitopes in G glycoprotein may be useful for effective epitope based vaccine design against pathogenic Henipavirus
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48. Emerging genetic diversity of SARS-CoV-2 RNA dependent RNA polymerase (RdRp) alters its B-cell epitopes
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49. B-cell epitope prediction for peptide-based vaccine design: towards a paradigm of biological outcomes for global health
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50. Challenges related to the immunogenicity of parenteral recombinant proteins: Underlying mechanisms and new approaches to overcome it
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51. Specificity, Polyspecificity and Heterospecificity of Antibody-Antigen Recognition
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53. Classification epitopes in groups based on their protein family
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54. The Relationship between B-cell Epitope and Mimotope Sequences
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57. Epitope Predictions
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59. Novel peptides screened by phage display peptide library can mimic epitopes of the FnBPA‐A protein and induce protective immunity against Staphylococcus aureus in mice
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62. Exploration of Computational Aids for Effective Drug Designing and Management of Viral Diseases: A Comprehensive Review
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63. Prediction of Antibody Epitopes
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64. Antigenicity and Immunogenicity of Viral Proteins
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65. Design of a Multiepitope Pan‐Proteomic mRNA Vaccine Construct Against African Swine Fever Virus: A Reverse Vaccinology Approach
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66. Meta-analysis of IgE-binding allergen epitopes
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67. Physicochemical determinants of antibody-protein interactions
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68. Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm
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69. Review of Immunoinformatic approaches to in-silico B-cell epitope prediction
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78. Computational Immunogenetics
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80. Novel overlapping subgraph clustering for the detection of antigen epitopes
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81. Benchmarking the PEPOP methods for mimicking discontinuous epitopes
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82. Comprehensive Linear Epitope Prediction System for Host Specificity in Nodaviridae
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88. Sequence-based B-cell epitope prediction by using associations in antibody-antigen structural complexes
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89. A voting mechanism-based linear epitope prediction system for the host-specific Iridoviridae family
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93. Cysteine-Free Proteins in the Immunobiology of Arthropod-Borne Diseases
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94. Prediction of Peptide Reactivity with Human IVIg through a Knowledge-Based Approach
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95. Using structural analysis to generate parasite‐selective monoclonal antibodies
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98. Epitope mapping of antibodies towards human protein targets
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99. Estimated limits of organism-specific training for epitope prediction
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