The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X!Tandem searches
Abstract
The identification of proteins by mass spectrometry is a standard technique in the field of proteomics, relying on search engines to perform the identifications of the acquired spectra. Here, we present a user‐friendly, lightweight and open‐source graphical user interface called SearchGUI ( http://searchgui.googlecode.com ), for configuring and running the freely available OMSSA (open mass spectrometry search algorithm) and X!Tandem search engines simultaneously. Freely available under the permissible Apache2 license, SearchGUI is supported on Windows, Linux and OSX.
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Cites
Mass spectrometry-based proteomics
Aebersold, R., & Mann, M. (2003) · Nature · doi:10.1038/nature01511 · Cited by 6,955
Cited by
MS-GF+ makes progress towards a universal database search tool for proteomics
Kim, S., & Pevzner, P. A. (2014) · Nature Communications · doi:10.1038/ncomms6277 · Cited by 1,098
Eichenberger, R. M., Ryan, S., Jones, L., Buitrago, G., Polster, R., Montes de Oca, M., Zuvelek, J., Giacomin, P. R., Dent, L. A., Engwerda, C. R., et al. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.00850 · Cited by 197
Menschaert, G., Van Criekinge, W., Notelaers, T., Koch, A., Crappé, J., Gevaert, K., & Van Damme, P. (2013) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m113.027540 · Cited by 173
Reich, S., Nguyen, C. D. L., Has, C., Steltgens, S., Soni, H., Coman, C., Freyberg, M., Bichler, A., Seifert, N., Conrad, D., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-16747-y · Cited by 90
Koch, A., Gawron, D., Steyaert, S., Ndah, E., Crappé, J., De Keulenaer, S., De Meester, E., Ma, M., Shen, B., Gevaert, K., et al. (2014) · PROTEOMICS · doi:10.1002/pmic.201400180 · Cited by 76
Metadata
- Authors
- Vaudel, M., Barsnes, H., Berven, F. S., Sickmann, A., & Martens, L.
- Venue
- PROTEOMICS
- Publisher
- Wiley
- Published
- 2011-01-31
- Volume
- 11
- Issue
- 5
- Pages
- 996-999
- ISSN
- 1615-9853 (ISSN-L)
- 1615-9861
- OpenAlex
- W2019158910
- Cited by
- 356
- References
- 1
- FWCI
- 6.16
- Type
- journal article
- Language
- en
- Open access
- closed
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- Vaudel, M., Barsnes, H., Berven, F. S., Sickmann, A., & Martens, L. (2011). SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X!Tandem searches. PROTEOMICS. https://doi.org/10.1002/pmic.201000595
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
