Applications of targeted proteomics in systems biology and translational medicine

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Items 101–184 of 184

1. Proteomics Complementation of the Rat Uterotrophic Assay for Estrogenic Endocrine Disruptors: A Roadmap of Advancing High Resolution Mass Spectrometry-Based Shotgun Survey to Targeted Biomarker Quantifications
   László Prókai, Fatima Rahlouni, Khadiza Zaman, Vien Nguyen, Katalin Prókai-Tátrai · 2021 · International Journal of Molecular Sciences
2. Mass Spectrometry-Based Approaches to Understand the Molecular Basis of Memory
   Arthur Henriques Pontes, Marcelo Valle de Sousa · 2016 · Frontiers in Chemistry
3. A Complete Proteomic Workflow to Study Brain-Related Disorders via Postmortem Tissue
   Guilherme Reis‐de‐Oliveira, Mariana Fioramonte, Daniel Martins‐de‐Souza · 2018 · Methods in molecular biology
4. Metabolic changes in the brain and blood of rats following acoustic trauma, tinnitus and hyperacusis
   Jun Bao He, Jiye Aa, Jianguo Sun, Paul F. Smith, Dirk De Ridder, Guangji Wang, Yiwen Zheng · 2021 · Progress in brain research
5. Peroxidatic cysteine residue of peroxiredoxin 2 separated from human red blood cells treated by tert-butyl hydroperoxide is hyperoxidized into sulfinic and sulfonic acids
   Yo-ichi Ishida, Mariko Aki, Sohta Fujiwara, Masami Nagahama, Yuki Ogasawara · 2017 · Human Cell
6. Optimizing SureQuant for Targeted Peptide Quantification: a Technical Comparison with PRM and SWATH-MS Methods
   Minia Antelo-Varela, Dirk Bumann, Alexander Schmidt · 2024 · Analytical Chemistry
7. Plasma Proteomic Assessment of Calcific Aortic Valve Disease in Older Adults
   Anna E. Bortnick, Thomas R. Austin, Emily Hamerton, Valborg Guðmundsdóttir, Valur Emilsson, Lori L. Jennings, Vilmundur G. Gudnason, David S. Owens, Daniele Massera, Line Dufresne et al. · 2025 · Journal of the American Heart Association
8. Quantification of Inflammasome Adaptor Protein ASC in Biological Samples by Multiple-Reaction Monitoring Mass Spectrometry
   Annegret Ulke‐Lemée, Arthur N. Lau, Michelle C. Nelson, Matthew Thomas James, Daniel A. Muruve, Justin A. MacDonald · 2018 · Inflammation
9. Finding new edges: systems approaches to MTOR signaling
   Alexander Martin Heberle, Ulrike Rehbein, Maria Rodríguez-Peiris, Kathrin Thedieck · 2021 · Biochemical Society Transactions
10. A TRUSTED targeted mass spectrometry assay for pan-herpesvirus protein detection
    Michelle A. Kennedy, Matthew D. Tyl, Cora N. Betsinger, Joel D. Federspiel, Xinlei Sheng, Jesse H. Arbuckle, Thomas M. Kristie, Ileana M. Cristea · 2022 · Cell Reports
11. Nutrigenomics and polyphenols
    M. Antónia Nunes, Francisca Rodrigues, Ana F. Vinha, Rita Carneiro Alves, M. Beatriz P.P. Oliveira · 2018 · Elsevier eBooks
12. An Overview on G Protein-coupled Receptor-induced Signal Transduction in Acute Myeloid Leukemia
    Frode Selheim, Elise Aasebø, Catalina Ribas, Anna M. Aragay · 2019 · Current Medicinal Chemistry
13. Introducing plasma/serum glycodepletion for the targeted proteomics analysis of cytolysis biomarkers
    Pauline Maes, Sandrine Donadio, Mathilde Louwagie, Yohann Couté, Guillaume Picard, Claire Lacoste, Christophe Bruley, Jérôme Garin, Philippe Ichaı̈, Jamila Faivre et al. · 2017 · Talanta
14. Lack of anti-TNF drugs levels in fistula tissue – a reason for nonresponse in Crohn’s perianal fistulating disease?
    Samuel O. Adegbola, Magali Sarafian, Kapil Sahnan, Alexandros Pechlivanis, Robin K.S. Phillips, Janindra Warusavitarne, Omar Faiz, James Haddow, Charles H. Knowles, Phil J. Tozer et al. · 2021 · European Journal of Gastroenterology & Hepatology
15. Pharmacological Evaluation of Drugs in Animal Models of Tinnitus
    Yiwen Zheng, Jessica McTavish, Paul F. Smith · 2020 · Current topics in behavioral neurosciences
16. Targeted Proteomic Profiling Revealed Roles of Small GTPases during Osteogenic Differentiation
    Yen‐Yu Yang, Ruthia Soh, Madeline K. M. Vera-Colón, Ming Shyan Huang, Nicole I. zur Nieden, Yinsheng Wang · 2023 · Analytical Chemistry
17. Clinical proteomics: Insights from IGF-I
    Jakob Albrethsen, Hanne Winther Frederiksen, Trine Holm Johannsen, Anna‐Maria Andersson, Anders Juul · 2017 · Clinica Chimica Acta
18. Oncoproteomics: insight into current proteomic technologies in cancer biomarker discovery and treatment
    Shrestha Dutta, Swatilekha Ghosh, Abhishek B. Mishra, Rajgourab Ghosh · 2022 · Journal of Proteins and Proteomics
19. Proteomic profiling of HIV-infected T-cells by SWATH mass spectrometry
    Jason DeBoer, Melinda S. Wojtkiewicz, Nicole A. Haverland, Yan Li, Emma Harwood, Emily Leshen, Joseph W. George, Pawel S. Ciborowski, Michael Belshan · 2018 · Virology
20. Purple: A Computational Workflow for Strategic Selection of Peptides for Viral Diagnostics Using MS-Based Targeted Proteomics
    Johanna Lechner, Felix Hartkopf, Pauline Hiort, Andreas Nitsche, Marica Grossegesse, Joerg Doellinger, Bernhard Y. Renard, Thilo Muth · 2019 · Viruses
21. Absolute quantification of urinary neutrophil gelatinase‐associated lipocalin by ultra‐high‐performance liquid chromatography/tandem mass spectrometry and the diagnostic efficacy of acute kidney injury
    Huoyan Ji, Lili Xu, Jianyou Su, Lei J. Shen, Huimin Wang, Jianxin Wang, Feng Wang, Shaoqin Ju · 2019 · Rapid Communications in Mass Spectrometry
22. Cancer-Associated Membrane Protein as Targeted Therapy for Bladder Cancer
    Adlina Roslan, Nurshahira Sulaiman, Khairul Asri Mohd Ghani, Armania Nurdin · 2022 · Pharmaceutics
23. Quantitation of myosin regulatory light chain phosphorylation in biological samples with multiple reaction monitoring mass spectrometry
    Mona Chappellaz, Hayden Segboer, Annegret Ulke‐Lemée, Cindy Sutherland, Huey‐Miin Chen, Justin A. MacDonald · 2018 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
24. Reduction of multiple reaction monitoring protein target list using correlation analysis
    Holger Alexander Ebhardt, Pierre Ponchon, Konstantinos Theodosiadis, Christophe Fuerer, Marie‐Claude Courtet‐Compondu, Jonathan O’Regan, Michael Affolter, Yousef Joubran · 2022 · Journal of Dairy Science
25. SRM-MS Applications in Proteomics
    Mahmud Hossain · 2020 · Springer eBooks
26. Monitoring one-carbon metabolism by mass spectrometry to assess liver function and disease
    Laura Guerrero, Bruno Sangro, Verónica Ambao, José Ignacio Granero, António Ramos-Fernández, Alberto Paradela, Fernando José Corrales · 2021 · Journal of Physiology and Biochemistry
27. Single glomerular proteomics: A novel tool for translational glomerular cell biology
    Markus Matthias Rinschen · 2019 · Methods in cell biology
28. An overview of metabolomic and proteomic profiling in bipolar disorder and its clinical value
    Henrique Caracho Ribeiro, Flávia da Silva Zandonadi, Alessandra Sussulini · 2023 · Expert Review of Proteomics
29. Simultaneous Quantification of Apolipoprotein C-III O-Glycoforms by Protein-MRM
    Hyo‐Jin Kim, Dong Huey Cheon, Won Suk Yang, Je‐Hyun Baek · 2022 · Journal of Proteome Research
30. Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data Acquisition
    Ka Yang, Joao A. Paulo, Steven P. Gygi, Qing Yu · 2024 · Journal of the American Society for Mass Spectrometry
31. Harnessing mass spectrometry-based proteomics for continuous directed evolution
    Katharina Belt, David Obe, Mark A. Wilson, A. Harvey Millar, Ulschan Bathe · 2025 · Synthetic Biology
32. Profiling of antioxidative enzyme expression induced by various food components using targeted proteome analysis
    Sven Bartenbacher, Christiane Östreicher, Monika Pischetsrieder · 2017 · Molecular Nutrition & Food Research
33. Benchmarking mass spectrometry based proteomics algorithms using a simulated database
    Muaaz Gul Awan, Abdullah Gul Awan, Fahad Saeed · 2021 · Network Modeling Analysis in Health Informatics and Bioinformatics
34. Application of Skyline for Analysis of Protein–Protein Interactions In Vivo
    Arman Kulyyassov · 2021 · Molecules
35. Salivary Bioscience and Periodontal Medicine
    Chen Xuan Wei, Yanbao Yu, Gajender Aleti, Manny Torralba, Anna Edlund, Karen E. Nelson, Marcelo Freire · 2020 · Springer eBooks
36. ProPickML: Advancing Clinical Diagnostics with Automated Peak Picking in Label-Free Targeted Proteomics
    Elloise Coyle, Mickaël Leclercq, Clarisse Gotti, Florence Roux‐Dalvai, Arnaud Droit · 2024 · Journal of Proteome Research
37. The Proteomics and Metabolomics of Pain
    David Gómez‐Varela, Manuela Schmidt · 2018 · Oxford University Press eBooks
38. Trying to Reveal the Mysteries of Stem Cells Using “Omics” Strategies
    Khadijeh Falahzadeh, Masumeh Jalalvand, Sepideh Alavi-Moghadam, Nikoo Bana, Babak Negahdari · 2019 · Stem cell biology and regenerative medicine
39. Multiplexed Isobaric Tagging Protocols for Quantitative Mass Spectrometry Approaches to Auditory Research
    Douglas E. Vetter, Johnvesly Basappa · 2016 · Methods in molecular biology
40. Integrative Analysis of Multi-Omics Data
    Lokesh P. Tripathi, Tsuyoshi Esaki, Mari Nogami Itoh, Y. Ann Chen, Kenji Mizuguchi · 2018 · Elsevier eBooks
41. FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes
    Muhammad Rashid, Muhammad Omar, Tapan Kumar Mohanta · 2023 · Database
42. Seed protein electrophoresis in plant genetics: Commemorating the pioneering contributions of Prof. Chittaranjan Kole and team to the foundation of plant proteomics
    Sarita K. Pandey, Shalini Tiwari, Poulami Bhattacharjee, Abhishek Anand, Lekha T. Pazhamala, Jeshima Khan Yasin, Roshan Kumar Yadav · 2025 · The Plant Genome
43. Sample Preparation for Proteomic Analysis of Neisseria meningitidis
    Benjamin Luke Schulz · 2019 · Methods in molecular biology
44. Maximizing Depth of PTM Coverage: Generating Robust MS Datasets for Computational Prediction Modeling
    Anthony A. Iannetta, Leslie M. Hicks · 2022 · Methods in molecular biology
45. Using Galaxy for Proteomics
    Candace R. Guerrero, Pratik Dilip Jagtap, James E. Johnson, Timothy J. Griffin · 2016 · Royal Society of Chemistry eBooks
46. Chemical Biology of O-GlcNAc Glycosylation
    Nathan J. Cox, Thomas R. Meister, Michael Boyce · 2017 · Royal Society of Chemistry eBooks
47. Analyzing Recombinant Protein Production in Pichia pastoris with Targeted Proteomics
    Roslyn M. Bill, Annegret Ulke‐Lemée, Stephanie P. Cartwright, Rena Far, Jay Kim, Justin A. MacDonald · 2019 · Methods in molecular biology
48. A mean-field approach for modeling the propagation of perturbations in biochemical reaction networks
    Michelle Przedborski, David M. Sharon, Steven M. Chan, Mohammad Kohandel · 2021 · European Journal of Pharmaceutical Sciences
49. Genomics, Other “OMIC” Technologies, Precision Medicine, and Additional Biotechnology-Related Techniques
    Robert D. Sindelar · 2019 · Springer eBooks
50. GLUT2 regulation of p38 MAPK isoform protein expression and p38 phosphorylation in male versus female rat hypothalamic primary astrocyte Cultures
    Madhu Babu Pasula, Paul William Sylvester, Karen P. Briski · 2024 · IBRO Neuroscience Reports
51. On the feasibility of quantifying sodium channel Na v 1.6 protein in mouse brain using targeted ultra‐high‐performance/electrospray ionization multiple reaction monitoring mass spectrometry
    Luis E. Sojo, Rainbow Kwan, Cathy Dang, Matthew Tung, Jenny Li · 2019 · Rapid Communications in Mass Spectrometry
52. Glycoprotein Biomarkers
    Shuwei Li, Stefani N. Thomas, Shuang Yang · 2017 · Wiley eBooks
53. Gill proteome networks explain energy homeostasis during salinity stress in Oreochromis mossambicus
    Larken Root, Dietmar Kültz · 2023
54. Combination of untargeted and targeted proteomics for secretome analysis of L-WRN cells
    Zixing Chen, Thomas C. N. Leung, Ying Lam Lui, Sai Ming Ngai, Hau Yin Chung · 2023 · Analytical and Bioanalytical Chemistry
55. Exosomes in early detection of urological Cancer
    Maryam Rahnama, Arezoo Mesri, Navid Ghasemzadeh, Mahdieh Feizi Eliyas Abad, Ahmad Movahedpour, Mortaza Taheri‐Anganeh, Hadi Maleki · 2025 · Clinica Chimica Acta
56. Protein Enrichment from Ascites Fluid Using Nanotrap Hydrogel Particle Technology
    Carly A. I. Twigg, Kathleen M. Madden, Kristin L.M. Boylan, Amy P.N. Skubitz, Stefani N. Thomas · 2026 · Journal of Proteome Research
57. Phosphoprotein Analysis by MALDI-TOF Mass Spectrometry using On-Probe Tandem Proteolysis and Dephosphorylation
    Agron Mataj, Reinhard I. Boysen, Milton T. W. Hearn · 2016 · Analytical Letters
58. Systems and Dynamical Medicine
    Qing Yan · 2017 · Elsevier eBooks
59. Preparation of iPSCs for Targeted Proteomic Analysis
    Anna Baud, Wendy Heywood, Daniel Little, Paul Gissen, Kevin A. Mills · 2019 · Methods in molecular biology
60. Proteomics
    С. И. Доломатов, В В Казакова, Walery Żukow · 2021 · Journal of Education Health and Sport
61. Mass Spectrometry of Proteins ☆
    Elena V. Romanova, Suresh Palani Annangudi, Hua-Chia Tai, Jonathan V. Sweedler · 2017 · Elsevier eBooks
62. Current applications of proteomics: a key and novel approach
    Vipin Kumar Sharma, Ravi Kumar · 2019 · International Journal of Advances in Medicine
63. Life of Proteomics: Technologies, Challenges, Viewpoints and Future
    Bioinformatic tools, High-throughput analysis · 2021 · Journal of Proteomics & Bioinformatics
64. Gill proteome networks explain energy homeostasis during salinity stress in Oreochromis mossambicus
    Larken Root, Dietmar Kültz · 2022
65. Systems Medicine of Autoimmune Diseases
    Julio R. Fernández · 2016 · Elsevier eBooks
66. Informatics Solutions for Selected Reaction Monitoring
    Birgit Schilling, Brendan MacLean, Jason M. Held, Bradford W. Gibson · 2016 · Royal Society of Chemistry eBooks
67. Discovering Protein Biomarkers from Clinical Peripheral Blood Mononuclear Cells Using Data-Independent Acquisition Mass Spectrometry
    Xin Ku, Wei Yan · 2019 · Methods in molecular biology
68. Functional Genomics in Yeast
    Maryam Hajikarimlou · 2020
69. High‐Performance Liquid Chromatography–Mass Spectrometry in Peptide and Protein Analysis
    Tun‐Li Shen · 2016 · Wiley eBooks
70. Identification Novel Biomarker for Acute Aortic Dissection Using 4D-Label-Free Proteomics
    Mengmeng Wang, Baozhu Wang, Maitudi Maitusun, Chen Bangdang, Dilare Adi, Meihua Shao, Chen-Fei Lu, Jing Zhong, Yi-Tong Ma, Xiang Ma · 2021 · Research Square
71. Gill proteome networks explain energy homeostasis during salinity stress in Oreochromis mossambicus
    Larken Root, Dietmar Kültz · 2022 · Research Square
72. Data from Development and Multiple Validation of the Protein Multi-marker Panel for Diagnosis of Pancreatic Cancer
    Yoseop Kim, Injoon Yeo, Iksoo Huh, Jaenyeon Kim, Dohyun Han, Jin‐Young Jang, Youngsoo Kim · 2023
73. Data from Development and Multiple Validation of the Protein Multi-marker Panel for Diagnosis of Pancreatic Cancer
    Yoseop Kim, Injoon Yeo, Iksoo Huh, Jaenyeon Kim, Dohyun Han, Jin‐Young Jang, Youngsoo Kim · 2023
74. Mass spectrometry–based approaches for the identification of molecular mechanism of action of ayurvedic medicines in Parkinson disease
    Aparna Hegde, Shubham Sukerndeo Upadhyay, Thottethodi Subrahmanya Keshava Prasad, Prashant Kumar Modi · 2023 · Elsevier eBooks
75. Decoding Translational Control and Gene Expression
    Sara Takalloo · 2024
76. Introduction to proteomics, metabolomics, and ionomics
    Sajad Majeed Zargar, Asmat Farooq, Parvaze Ahmad Sofi, Jebi Sudan, Uneeb Urwat, Khursheed Hussain · 2024 · Elsevier eBooks
77. Quantitative Proteomics on Immune Cells of ME/CFS Patients Using SWATH-MS
    Abhishek Kumar, Katie Peppercorn, Torsten Kleffmann · 2025 · Methods in molecular biology
78. Evaluation of Tumor Markers in Endometrial Cancer Differentiation and Abnormal Uterine Bleeding: A Systematic Review and Meta-Analysis
    Aysan Dehghani, Reyhaneh Aftabi, Milad Hejazi, Yuosef Noori, Somayeh Ghasemzadeh · 2025 · Journal of Obstetrics Gynecology and Cancer Research
79. Développement d’une méthodologie couplant la photodissociation laser et la spectrométrie de masse haute résolution pour l’identification de nouveaux biomarqueurs
    L. García · 2017
80. Développement d'une stratégie de quantification multiplexée par spectrométrie de masse pour la recherche de nouveaux biomarqueurs protéiques dans le diagnostic du sepsis fongique
    Anne Incamps · 2019
81. Les facteurs de virulence de Staphylococcus aureus associés aux pneumonies communautaires sévères : focus sur l’hémolysine-gamma
    Mariane Pivard · 2022 · theses.fr (ABES)
82. Deciphering mitochondrial metabolic vulnerabilities in ovarian clear cell carcinoma with mass spectrometry-based clinical proteomics
    Albert Barrios, Stefani N. Thomas · 2026 · Expert Review of Proteomics
83. Proteomics in Gastrointestinal Diseases of Companion Animals: Current State and Knowledge Gaps
    Jane Yu, Craig G. Ruaux · 2026 · Animals
84. Advancing gene feature selection: a synergistic approach with co-expression networks and genetic algorithms
    Zhilin Wangy, Weiping Ding, Jinquan Zhang, Ali Asghar Heidari, Mingjing Wang, Huiling Chen · 2026 · Journal of Advanced Research