ZDOCK: An initial‐stage protein‐docking algorithm
Cited by (1,002)
Items 501–600 of 1,002
- Structural basis of RGD-hirudin binding to thrombin: Tyr3 and five C-terminal residues are crucial for inhibiting thrombin activityYinong Huang, Yanling Zhang, Bing Tian Zhao, Qiping Xu, Xiushi Zhou, Houyan Song, Min Yu, Wei Mo · 2014 · BMC Structural Biology
- Molecular modeling and dynamics simulations of PNP from Streptococcus agalactiaeRafael Andrade Caceres, Luís Fernando Saraiva Macedo Timmers, Raquel Dias, Luiz Augusto Basso, Diógenes Santiago Santos, Walter Filgueira de Azevedo · 2008 · Bioorganic & Medicinal Chemistry
- Analysis of Arabidopsis thioredoxin-h isotypes identifies discrete domains that confer specific structural and functional propertiesYoung Jun Jung, Yong Hun Chi, Ho Byoung Chae, Mi Rim Shin, Eun Seon Lee, Joon‐Yung Cha, Seol Ki Paeng, Yuno Lee, Jinho Park, Woe Yeon Kim et al. · 2013 · Biochemical Journal
- Crystal Structure of CRN-4: Implications for Domain Function in Apoptotic DNA DegradationY.-Y. Hsiao, Akihisa Nakagawa, Zhonghao Shi, Shohei Mitani, Ding Xue, Hanna S. Yuan · 2008 · Molecular and Cellular Biology
- Combining Statistical Potentials with Dynamics-Based Entropies Improves Selection from Protein Decoys and Docking PosesMichael T. Zimmermann, Sumudu P. Leelananda, Andrzej Kloczkowski, Robert L. Jernigan · 2012 · The Journal of Physical Chemistry B
- Interaction of the Small GTPase Cdc42 with Arginine Kinase Restricts White Spot Syndrome Virus in ShrimpJidong Xu, Haishan Jiang, Tiandi Wei, Ke-Yi Zhang, Xian‐Wei Wang, Xiao‐Fan Zhao, Jin‐Xing Wang · 2016 · Journal of Virology
- New measures for estimating surface complementarity and packing at protein–protein interfacesPralay Mitra, Debnath Pal · 2010 · FEBS Letters
- Contributions of Intracellular Loops 2 and 3 of the Lutropin Receptor in Gs CouplingKrassimira Angelova, Francesca Fanelli, David Puett · 2007 · Molecular Endocrinology
- Identifying epitopes for cluster of differentiation and design of new peptides inhibitors against human SARS-CoV-2 spike RBD by an in-silico approachJihane Akachar, El Mehdi Bouricha, Mohammed Hakmi, Lahcen Belyamani, Rachid El Jaoudi, Azeddine Ibrahimi · 2020 · Heliyon
- A reinforcement learning approach for protein–ligand binding pose predictionChenran Wang, Yang Chen, Yuan Zhang, Keqiao Li, Menghan Lin, Feng Pan, Wei Wu, Jinfeng Zhang · 2022 · BMC Bioinformatics
- Rapid determination of RMSDs corresponding to macromolecular rigid body motionsPetr A. Popov, Sergei Grudinin · 2014 · Journal of Computational Chemistry
- Efficient comprehensive scoring of docked protein complexes using probabilistic support vector machinesOliver Martin, Dietmar Schomburg · 2007 · Proteins Structure Function and Bioinformatics
- IN SILICO SCREENING OF PROTEIN–PROTEIN INTERACTIONS WITH ALL-TO-ALL RIGID DOCKING AND CLUSTERING: AN APPLICATION TO PATHWAY ANALYSISYuri Matsuzaki, Yusuke Matsuzaki, Toshiyuki Sato, Yutaka Akiyama · 2009 · Journal of Bioinformatics and Computational Biology
- A Comprehensive Model of the Spectrin Divalent Tetramer Binding Region Deduced Using Homology Modeling and Chemical Cross-linking of a Mini-spectrinDonghai Li, Sandra L. Harper, Hsin‐Yao Tang, Yelena D. Maksimova, Patrick G. Gallagher, David W. Speicher · 2010 · Journal of Biological Chemistry
- Molecular Information of Charybdotoxin Blockade in the Large Conductance Calcium-activated Potassium ChannelSu Qiu, Hong Yi, Hui Liu, Zhijian Cao, Yingliang Wu, Wenxin Li · 2009 · Journal of Chemical Information and Modeling
- Directed Evolution of EnzymesManfred T. Reetz · 2012 · Wiley eBooks
- Delineation of B-cell Epitopes of Salmonella enterica serovar Typhi Hemolysin E: Potential antibody therapeutic targetChai Fung Chin, Jing Yi Lai, Yee Siew Choong, Amy Amilda Anthony, Asma Ismail, Theam Soon Lim · 2017 · Scientific Reports
- Targeting the lysosome by an aminomethylated Riccardin D triggers DNA damage through cathepsin B‐mediated degradation of BRCA1Yanyan Wang, Huanmin Niu, Zhongyi Hu, Mengyuan Zhu, Lining Wang, Lili Han, Lilin Qian, Keli Tian, Huiqing Yuan, Hong‐Xiang Lou · 2018 · Journal of Cellular and Molecular Medicine
- Potential Therapeutic Approaches to Alzheimer’s Disease By Bioinformatics, Cheminformatics And Predicted Adme-Tox ToolsSperanța Avram, Maria Mernea, Carmen Limban, Florin Borcan, Mariana Carmen Chifiriuc · 2019 · Current Neuropharmacology
- Overcoming the blood–brain barrier by Annexin A1-binding peptide to target brain tumoursMotohiro Nonaka, Misa Suzuki‐Anekoji, Jun Nakayama, Hideaki Mabashi‐Asazuma, Donald L. Jarvis, Jiunn-Chern Yeh, Kazuhiko Yamasaki, Tomoya O. Akama, Chun‐Teng Huang, Alexandre Rosa Campos et al. · 2020 · British Journal of Cancer
- A Structural Model of the Erythrocyte Spectrin Heterodimer Initiation Site Determined Using Homology Modeling and Chemical Cross-linkingDonghai Li, Hsin‐Yao Tang, David W. Speicher · 2007 · Journal of Biological Chemistry
- Molecular Binding Sites Are Located Near the Interface of Intrinsic Dynamics Domains (IDDs)Hongchun Li, Shun Sakuraba, Aravind Chandrasekaran, Lee‐Wei Yang · 2014 · Journal of Chemical Information and Modeling
- Predicting 3D structures of transient protein–protein complexes by homologyPetras J. Kundrotas, Emil G Alexov · 2006 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- A Shape Descriptor for Fast Complementarity Matching in Molecular DockingΑπόστολος Αξενόπουλος, Petros Daras, Georgios E. Papadopoulos, Elias N. Houstis · 2011 · IEEE Transactions on Computational Biology and Bioinformatics
- AtObgC-AtRSH1 interaction may play a vital role in stress response signal transduction in ArabidopsisJi Chen, Woo Young Bang, Yuno Lee, Songmi Kim, Keun Woo Lee, Se Won Kim, Young Sim Son, Daewon Kim, Salina Akhter, Jeong Dong Bahk · 2013 · Plant Physiology and Biochemistry
- Structural Prediction of Protein–Protein Interactions by Docking: Application to Biomedical ProblemsDidier Barradas‐Bautista, Mireia Rosell, Chiara Pallara, Juan Fernández‐Recio · 2017 · Advances in protein chemistry and structural biology
- Prediction of GluN2B-CT1290-1310/DAPK1 Interaction by Protein–Peptide Docking and Molecular Dynamics SimulationGao Tu, Tingting Fu, Fengyuan Yang, Lixia Yao, Weiwei Xue, Feng Zhu · 2018 · Molecules
- Phage antibody library screening for the selection of novel high-affinity human single-chain variable fragment against gastrin receptor: an in silico and in vitro studySepideh Jalilzadeh- Razin, Malihe Mantegi, Mohammad Reza Tohidkia, Yaghub Pazhang, Mohammad Mostafa Pourseif, Jaleh Barar, Yadollah Omidi · 2019 · DARU Journal of Pharmaceutical Sciences
- Integrating Cross-Linking Experiments with Ab Initio Protein–Protein DockingThom Vreven, Devin K. Schweppe, Juan D. Chavez, Chad R. Weisbrod, Sayaka Shibata, Chunxiang Zheng, James E. Bruce, Zhiping Weng · 2018 · Journal of Molecular Biology
- Phage‐derived fully human antibody scFv fragment directed against human vascular endothelial growth factor receptor 2 blocked its interaction with VEGFJuan Zhang, Haixin Li, Xiuyun Wang, Haidi Qi, Xiaoniu Miao, Tao Zhang, Guosheng Chen, Min Wang · 2012 · Biotechnology Progress
- Sensory Rhodopsin I and Sensory Rhodopsin II Form Trimers of Dimers in Complex with their Cognate TransducersPhilipp S. Orekhov, Arne Bothe, Heinz‐Jürgen Steinhoff, К. В. Шайтан, Stefan Raunser, Dimitrios Fotiadis, Ramona Schlesinger, Johann P. Klare, Martin Engelhard · 2017 · Photochemistry and Photobiology
- Monomeric dark rhodopsin holds the molecular determinants for transducin recognition: Insights from computational analysisDaniele Dell’Orco, Michele Seeber, Francesca Fanelli · 2007 · FEBS Letters
- Novel DNA Aptamer for CYP24A1 Inhibition with Enhanced Antiproliferative Activity in Cancer CellsMadhu Biyani, Kaori Yasuda, Yasuhiro Isogai, Yuki Okamoto, Weilin Wei, Noriyuki Kodera, Holger Flechsig, Toshiyuki Sakaki, Miki Nakajima, Manish Biyani · 2022 · ACS Applied Materials & Interfaces
- An in silico approach to study the role of epitope order in the multi-epitope-based peptide (MEBP) vaccine designMuthu Raj Salaikumaran, Prasanna Sudharson Kasamuthu, Veeranarayanan Surya Aathmanathan, Prasad V.L.S. Burra · 2022 · Scientific Reports
- Navigating the Computational Seas: A Comprehensive Overview of Molecular Docking Software in Drug DiscoveryMohd Mursal, Mohammad Nazir Ahmad, Sahil Hussain, Mohemmed Faraz Khan · 2024 · Biomedical engineering
- Structural Model for the Interaction of a Designed Ankyrin Repeat Protein with the Human Epidermal Growth Factor Receptor 2V. Chandana Epa, Olan Dolezal, Larissa Doughty, Xiaowen Xiao, Christian Jöst, Andreas Plückthun, Timothy E. Adams · 2013 · PLoS ONE
- Class Pi Glutathione Transferase Unfolds via a Dimeric and Not Monomeric Intermediate: Functional Implications for an Unstable MonomerSamantha Gildenhuys, Louise A. WALLACE, Jonathan Burke, David Balchin, Yasien Sayed, Heini W. Dirr · 2010 · Biochemistry
- Using the Fast Fourier Transform in Binding Free Energy CalculationsT. Nguyen, Huan-Xiang Zhou, D. Minh · 2017 · Journal of Computational Chemistry
- NTP-binding properties of the blue-light receptor YtvA and effects of the E105L mutationValentina Buttani, Wolfgang Gärtner, Aba Losi · 2007 · European Biophysics Journal
- Dual Roles for Prox1 in the Regulation of the Chicken βB1-Crystallin PromoterXiao‐Ren Chen, Jennifer R. Taube, V. N. Simirskii, Tapan P. Patel, Melinda K. Duncan · 2008 · Investigative Ophthalmology & Visual Science
- A holistic approach to protein dockingSanbo Qin, Huan‐Xiang Zhou · 2007 · Proteins Structure Function and Bioinformatics
- STRUCTURAL FEATURES AND EVOLUTION OF PROTEIN-PROTEIN INTERACTIONSJoachim von Eichborn, Stefan Günther, Robert Preißner · 2010 · International Conference on Genome Informatics (GIW)
- Insight into structural rearrangements and interdomain interactions related to electron transfer between flavin mononucleotide and heme in nitric oxide synthase: A molecular dynamics studyYinghong Sheng, Linghao Zhong, Dahai Guo, Gavin Lau, Changjian Feng · 2015 · Journal of Inorganic Biochemistry
- Adaptability in protein structures: structural dynamics and implications in ligand designAtanu Maity, Sarmistha Majumdar, Prerna Priya, Pallavi De, Sudipto Saha, Shubhra Ghosh Dastidar · 2014 · Journal of Biomolecular Structure and Dynamics
- A TLR4-derived non-cytotoxic, self-assembling peptide functions as a vaccine adjuvant in miceAnshika Tandon, Manisha Pathak, Munesh Kumar Harioudh, Sabahuddin Ahmad, Mohd Sayeed, Tayyaba Afshan, Mohammad Imran Siddiqi, Kalyan Mitra, Shailja Mishra Bhattacharya, Jimut Kanti Ghosh · 2018 · Journal of Biological Chemistry
- Convergence of two global regulators to coordinate expression of essential virulence determinants of Mycobacterium tuberculosisHina Khan, Partha Paul, Ritesh Rajesh Sevalkar, Sangita Kachhap, Balvinder Singh, Dibyendu Sarkar · 2022 · eLife
- Inclusion of the orientational entropic effect and low‐resolution experimental information for protein–protein docking in Critical Assessment of PRedicted Interactions (CAPRI)Sheng‐You Huang, Chengfei Yan, Sam Z. Grinter, Shan Chang, Lin Jiang, Xiaoqin Zou · 2013 · Proteins Structure Function and Bioinformatics
- Enhanced antifungal and insect α-amylase inhibitory activities of Alpha-TvD1, a peptide variant of Tephrosia villosa defensin (TvD1) generated through in vitro mutagenesisSmitha Vijayan, Jafargholi Imani, Karunakar Tanneeru, Lalitha Guruprasad, K.-H. Kogel, P. B. Kirti · 2012 · Peptides
- Replica Exchange Improves Sampling in Low-Resolution Docking Stage of RosettaDockZhe Zhang, Oliver F. Lange · 2013 · PLoS ONE
- Differential molecular information of maurotoxin peptide recognizing IKCa and Kv1.2 channels explored by computational simulationHong Yi, Su Qiu, Yingliang Wu, Wenxin Li, Baoshan Wang · 2011 · BMC Structural Biology
- Energetic Mechanism of Cytochrome c-Cytochrome c Oxidase Electron Transfer Complex Formation under Turnover Conditions Revealed by Mutational Effects and Docking SimulationWataru Sato, Seiji Hitaoka, Kaoru Inoue, Mizue Imai, Tomohide Saio, Takeshi Uchida, Kyoko Shinzawa‐Itoh, Shinya Yoshikawa, Kazunari Yoshizawa, Koichiro Ishimori · 2016 · Journal of Biological Chemistry
- Identification and pharmaceutical evaluation of novel frog skin-derived serine proteinase inhibitor peptide–PE-BBI (Pelophylax esculentus Bowman-Birk inhibitor) for the potential treatment of cancerPeng Lyu, Lilin Ge, Rui Ma, Ran Wei, Cian Michael McCrudden, Tianbao Chen, Chris Shaw, Hang Fai Kwok · 2018 · Scientific Reports
- Decoding Protein-protein Interactions: An OverviewOlivia Slater, Bethany Miller, Maria Kontoyianni · 2020 · Current Topics in Medicinal Chemistry
- Discovery of Marburg virus neutralizing antibodies from virus-naïve human antibody repertoires using large-scale structural predictionsNina G. Bozhanova, Amandeep K. Sangha, Alexander M. Sevy, Pavlo Gilchuk, Kai Huang, Rachel S. Nargi, Joseph X. Reidy, Andrew Trivette, Robert H. Carnahan, Alexander A. Bukreyev et al. · 2020 · Proceedings of the National Academy of Sciences
- StructureMan: A Structure Manipulation Tool to Study Large Scale Biomolecular InteractionsYuejiao Xian, Yixin Xie, Sebastian Miki Silva, Chitra B. Karki, Weihong Qiu, Lin Li · 2021 · Frontiers in Molecular Biosciences
- DeepComplex: A Web Server of Predicting Protein Complex Structures by Deep Learning Inter-chain Contact Prediction and Distance-Based ModellingFarhan Quadir, Raj S. Roy, Elham Soltanikazemi, Jianlin Cheng · 2021 · Frontiers in Molecular Biosciences
- Epitope Prediction Based on Random Peptide Library Screening: Benchmark Dataset and Prediction Tools EvaluationPingping Sun, Wenhan Chen, Yanxin Huang, Hongyan Wang, Zhiqiang Ma, Yinghua Lv · 2011 · Molecules
- Novel, structure‐based mechanism for uridylylation of the genome‐linked peptide (VPg) of picornavirusesCatherine H. Schein, David E. Volk, Numan Oezguen, Aniko V. Paul · 2006 · Proteins Structure Function and Bioinformatics
- The Molecular Recognition Mechanism for Superoxide Dismutase Presequence Binding to the Mitochondrial Protein Import Receptor Tom20 from Oryza sativa Involves an LRTLA MotifYubo Zhang, Marc Baaden, Junjie Yan, Jinzhen Shao, Su Qiu, Yingliang Wu, Yi Ding · 2010 · The Journal of Physical Chemistry B
- Structural Determinates for Apolipoprotein E-Derived Peptide Interaction with the α7 Nicotinic Acetylcholine ReceptorElaine A. Gay, Rachelle J. Bienstock, Patricia W. Lamb, Jerrel L. Yakel · 2007 · Molecular Pharmacology
- TPR domain of NrfG mediates complex formation between heme lyase and formate‐dependent nitrite reductase in Escherichia coli O157:H7Dohyun Han, Kyunggon Kim, Jongkil Oh, Jungeun Park, Youngsoo Kim · 2007 · Proteins Structure Function and Bioinformatics
- Blockade of Ethanol-Induced Potentiation of Glycine Receptors by a Peptide That Interferes with Gβγ BindingLeonardo Guzmán, Gustavo Moraga‐Cid, Ariel Ávila, Maximiliano Figueroa, Gonzalo E. Yévenes, Jorge Fuentealba, Luis Gerardo Aguayo · 2009 · Journal of Pharmacology and Experimental Therapeutics
- Positive selection of digestive Cys proteases in herbivorous ColeopteraJuan Vorster, Asieh Rasoolizadeh, Marie‐Claire Goulet, Conrad Cloutier, Frank Sainsbury, Dominique Michaud · 2015 · Insect Biochemistry and Molecular Biology
- Computational Study of Natural Compounds for the Clearance of Amyloid-Βeta: A Potential Therapeutic Management Strategy for Alzheimer’s DiseaseSyed Sayeed Ahmad, Haroon Zaman Khan, Syed Mohd Danish Rizvi, Siddique Akber Ansari, Riaz Ullah, Luca Rastrelli, Hafiz Majid Mahmood, Mohd. Haris Siddiqui · 2019 · Molecules
- Anti-inflammatory effects of FS48, the first potassium channel inhibitor from the salivary glands of the flea Xenopsylla cheopisZhenhui Deng, Qingye Zeng, Jie Tang, Bei Zhang, Jinwei Chai, John F. Andersen, Xin Chen, Xueqing Xu · 2021 · Journal of Biological Chemistry
- Improved the heterodimer protein complex prediction with protein language modelsBo Chen, Ziwei Xie, Jiezhong Qiu, Zhaofeng Ye, Jinbo Xu, Jie Tang · 2023 · Briefings in Bioinformatics
- FPGA Acceleration of Rigid Molecule InteractionsTom Van Court, Yongfeng Gu, Martin Herbordt · 2004 · IEEE International Symposium on Field-Programmable Custom Computing Machines (FCCM)
- Molecular modeling and molecular dynamics simulation study of the human Rab9 and RhoBTB3 C-terminus complexMuhammad Junaid, Ziyad Tariq Muhseen, Ata Ullah, Abdul Wadood, Junjun Liu, Houjin Zhang · 2014 · Bioinformation
- In Silico Screening of Mutational Effects on Transmembrane Helix Dimerization: Insights from Rigid-Body Docking and Molecular Dynamics SimulationsDaniele Dell’Orco, Pier Giuseppe De Benedetti, Francesca Fanelli · 2007 · The Journal of Physical Chemistry B
- Highly conserved ENY2/Sus1 protein binds to Drosophila CTCF and is required for barrier activityOksana G Maksimenko, Olga Kyrchanova, Artem N. Bonchuk, Viacheslav Stakhov, Alexander Parshikov, Pavel G Georgiev · 2014 · Epigenetics
- Molecular basis for the antagonistic activity of an anti-CXCR4 antibodyPeng Li, Melissa M. Damschroder, Kimberly E. Cook, Herren Wu, William F. Dall’Acqua · 2015 · mAbs
- Molecular Mechanism of Binding between 17β-Estradiol and DNATamsyn A. Hilder, Justin M. Hodgkiss · 2016 · Computational and Structural Biotechnology Journal
- Novel neurotoxic peptides from Protopalythoa variabilis virtually interact with voltage-gated sodium channel and display anti-epilepsy and neuroprotective activities in zebrafishQiwen Liao, Shengnan Li, Shirley W. I. Siu, Jean-Étienne R. L. Morlighem, Clarence T. T. Wong, Xiufen Wang, Gandhi Rádis‐Baptista, Simon Ming‐Yuen Lee · 2018 · Archives of Toxicology
- Targeting Kinase Interaction Networks: A New Paradigm in PPI Based Design of Kinase InhibitorsPranitha Jenardhanan, Manivel Panneerselvam, Premendu Prakash Mathur · 2019 · Current Topics in Medicinal Chemistry
- Integrating ab initio and template-based algorithms for protein–protein complex structure predictionSweta Vangaveti, Thom Vreven, Yang Zhang, Zhiping Weng · 2019 · Bioinformatics
- Enhanced sampling of protein conformational states for dynamic cross‐docking within the protein‐protein docking server SwarmDockMieczyslaw Torchala, Tereza Gerguri, Raphaël A. G. Chaleil, Patrick Gordon, Francis Russell, Miriam Keshani, Paul A. Bates · 2019 · Proteins Structure Function and Bioinformatics
- Txp40, a protein from Photorhabdus akhurstii, conferred potent insecticidal activity against the larvae of Helicoverpa armigera, Spodoptera litura and S. exiguaPrakash Yallapa Shankhu, Chetna Mathur, Abhishek Mandal, D. Sagar, Vishal Singh Somvanshi, Tushar Kanti Dutta · 2019 · Pest Management Science
- Biochemical Basis of Skin Disease Mal de Meleda: SLURP-1 Mutants Differently Affect Keratinocyte Proliferation and ApoptosisMikhail A. Shulepko, Maxim L. Bychkov, Zakhar O. Shenkarev, Dmitrii S. Kulbatskii, Alexey M. Makhonin, Alexander S. Paramonov, Anton O. Chugunov, Mikhail P. Kirpichnikov, Ekaterina N. Lyukmanova · 2021 · Journal of Investigative Dermatology
- Modeling of the OX1R–orexin-A complex suggests two alternative binding modesLasse Karhu, Ainoleena Turku, Henri Xhaard · 2015 · BMC Structural Biology
- Backbone Flexibility of CDR3 and Immune Recognition of AntigensJaafar N. Sleiman Haidar, Wei Zhu, Jacqueline Lypowy, Brian G. Pierce, Amtul Bari, Kris Persaud, Xenia Luna, Marshall D. Snavely, Dale L. Ludwig, Zhiping Weng · 2014 · Journal of Molecular Biology
- Structure of vaccinia virus A46, an inhibitor of TLR4 signaling pathway, shows the conformation of VIPER motifYong‐Woon Kim, Hasup Lee, Lim Heo, Chaok Seok, Jungwoo Choe · 2014 · Protein Science
- Scalable multi-GPU 3-D FFT for TSUBAME 2.0 SupercomputerAkira Nukada, Kento Sato, Satoshi Matsuoka · 2012 · International Conference for High Performance Computing, Networking, Storage and Analysis (SC)
- A Review of Current Computational Tools for Peptide–Protein DockingFábio G. Martins, Hélder A. Santos, Sérgio Filipe Sousa · 2026 · Journal of Computational Chemistry
- Exploring the catalytic mechanism of the first dimeric Bcp: Functional, structural and docking analyses of Bcp4 from Sulfolobus solfataricusDanila Limauro, Katia D’Ambrosio, Emma Langella, Giuseppina De Simone, Ilaria Galdi, Carlo Pedone, Emilia Maria Pedone, Simonetta Bartolucci · 2010 · Biochimie
- How different from random are docking predictions when ranked by scoring functions?Elisenda Feliu, Baldomero Oliva · 2010 · Proteins Structure Function and Bioinformatics
- USP24 stabilizes bromodomain containing proteins to promote lung cancer malignancyShao‐An Wang, Ming-Jer Young, W.Y. Jeng, Chia-Yu Liu, Jan‐Jong Hung · 2020 · Scientific Reports
- TRScore: a 3D RepVGG-based scoring method for ranking protein docking modelsLinyuan Guo, Jiahua He, Peicong Lin, Sheng‐You Huang, Jianxin Wang · 2022 · Bioinformatics
- Combining pairwise structural similarity and deep learning interface contact prediction to estimate protein complex model accuracy in CASP15Raj S. Roy, Jian Liu, Nabin Giri, Zhiye Guo, Jianlin Cheng · 2023 · Proteins Structure Function and Bioinformatics
- Review and Comparative Analysis of Methods and Advancements in Predicting Protein Complex StructureNan Zhao, Tong Wu, Wenda Wang, Lunchuan Zhang, Xinqi Gong · 2024 · Interdisciplinary Sciences Computational Life Sciences
- A modified thymosin alpha 1 inhibits the growth of breast cancer both in vitro and in vivo: suppressment of cell proliferation, inducible cell apoptosis and enhancement of targeted anticancer effectsXingzhen Lao, Bin Li, Meng Liu, Chen‐Yang Shen, Tingting Yu, Xiangdong Gao, Heng Zheng · 2015 · APOPTOSIS
- Molecular simulation analysis of the structure complex of C2 domains of DKK family members and β-propeller domains of LRP5/6: explaining why DKK3 does not bind to LRP5/6.Yasuyuki Fujii, Tyuji Hoshino, Hiromi Kumon · 2014 · PubMed
- Characterization of the Connexin45 Carboxyl-Terminal Domain Structure and Interactions with Molecular PartnersJennifer L. Kopanic, Mona Al‐Mugotir, Fabien Kieken, Sydney Zach, Andrew J. Trease, Paul L. Sorgen · 2014 · Biophysical Journal
- Modelling family 2 cystatins and their interaction with papainSuman Kumar Nandy, Rajabrata Bhuyan, Alpana Seal · 2012 · Journal of Biomolecular Structure and Dynamics
- NMR solution structure of poliovirus uridylyated peptide linked to the genome (VPgpU)Catherine H. Schein, Numan Oezguen, Gerbrand J. van der Heden van Noort, Dmitri V. Filippov, Aniko V. Paul, Eric A. Kumar, Werner A. Braun · 2010 · Peptides
- Scoring docking conformations using predicted protein interfacesReyhaneh Esmaielbeiki, Jean‐Christophe Nebel · 2014 · BMC Bioinformatics
- SP-Dock: Protein-Protein Docking Using Shape and Physicochemical ComplementarityΑπόστολος Αξενόπουλος, Petros Daras, Georgios E. Papadopoulos, Elias N. Houstis · 2013 · IEEE Transactions on Computational Biology and Bioinformatics
- Insilico study of the A2AR–D2R kinetics and interfacial contact surface for heteromerizationAmresh Prakash, Pratibha Mehta Luthra · 2012 · Amino Acids
- Characterization of a new Kv1.3 channel-specific blocker, J123, from the scorpion Buthus martensii KarschYin Shijin, Yi Hong, Yibao Ma, Chen Zongyun, Song Hee Han, Yingliang Wu, Cao Zhijian, Wenxin Li · 2008 · Peptides
- A Dynamic Model of Membrane-Bound Phospholipase Cβ2 Activation by Gβγ SubunitsDaniel Han, Urszula P. Golebiewska, Sebastian Stolzenberg, Suzanne Scarlata, Harel Weinstein · 2011 · Molecular Pharmacology
- Cyclosporine A binding to COX-2 reveals a novel signaling pathway that activates the IRE1α unfolded protein response sensorJ. Groenendyk, Tautvydas Paškevičius, H. Urra, Clément Viricel, Kui Wang, K. Barakat, C. Hetz, Lukasz Kurgan, L. Agellon, M. Michalak · 2018 · Scientific Reports