An improved protein decoy set for testing energy functions for protein structure prediction
Tsai, Jerry, Bonneau, Richard, Morozov, Alexandre V., Kuhlman, Brian, Rohl, Carol A., Baker, David·2003·Proteins: Structure, Function, and Bioinformatics
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- Protein Structure PredictionSitao Wu, Yang Zhang · 2009 · Springer eBooks
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- Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure predictionYuangen Yao, Rong Gui, Quan Liu, Ming Yi, Haiyou Deng · 2017 · BMC Bioinformatics
- A large decoy set of protein–protein complexes produced by flexible dockingGuillaume Launay, Thomas Simonson · 2010 · Journal of Computational Chemistry
- An Estimate of the Numbers and Density of Low-Energy Structures (or Decoys) in the Conformational Landscape of ProteinsKanagasabai Vadivel, N. Gautham · 2009 · PLoS ONE
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- A Graph Theoretic Approach to Protein Structure SelectionMarco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio · 2007 · Lecture notes in computer science
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- Neural Network Pairwise Interaction Fields for Protein Model Quality AssessmentAlberto J. M. Martín, Alessandro Vullo, Gianluca Pollastri · 2009 · Lecture notes in computer science
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- A Coarse-grained, Context-dependent Contact Potential for Protein Decoy DiscriminationYaohang Li · 2013
- Docking HPr to HPr Kinase with Partial Backbone Flexibility ByLian Guo · 2004
- Template Based Modeling and Structural Refinement of Protein-Protein Interactions.Brandon Govindarajoo · 2016 · Deep Blue (University of Michigan)
- Receptor-free Discrimination of Peptide Native Bound Conformations Suggests Limited Transferability of the “cen_std+score4l” Rosetta Energy Function From Proteins to PeptidesAndrea Bazzoli, Alessandro Contini · 2020 · Research Square
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