Funnels, pathways, and the energy landscape of protein folding: A synthesis

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Items 501–600 of 1,005

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5. Toward an Accurate Theoretical Framework for Describing Ensembles for Proteins under Strongly Denaturing Conditions
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7. Direct Measurement of Barrier Heights in Protein Folding
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8. Unraveling principles of lead discovery: from unfrustrated energy landscapes to novel molecular anchors.
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10. Folding of a small helical protein using hydrogen bonds and hydrophobicity forces
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11. Statistics of Kinetic Pathways on Biased Rough Energy Landscapes with Applications to Protein Folding
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12. Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations
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16. The Ultimate Fate of Supercooled Liquids
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18. Aminothiotyrosine Disulfide, an Optical Trigger for Initiation of Protein Folding
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19. Hydrophobic association of α-helices, steric dewetting, and enthalpic barriers to protein folding
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20. Global view of bionetwork dynamics: adaptive landscape
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21. Protein S-sulfenylation is a fleeting molecular switch that regulates non-enzymatic oxidative folding
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22. Energy landscapes, global optimization and dynamics of the polyalanine Ac(ala)8NHMe
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23. Ensemble versus single-molecule protein unfolding
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24. Energy landscape of a peptide consisting of α‐helix, 310‐helix, β‐turn, β‐hairpin, and other disordered conformations
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25. A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments
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26. The Rough Energy Landscape of Superfolder GFP Is Linked to the Chromophore
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28. Contact order dependent protein folding rates: Kinetic consequences of a cooperative interplay between favorable nonlocal interactions and local conformational preferences
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35. Shedding light on protein folding landscapes by single-molecule fluorescence
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36. Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding
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37. Temperature dependence of the folding rate in a simple protein model: Search for a “glass” transition
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42. Geometry and physics of proteins
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44. Protein Structure Prediction as a Hard Optimization Problem: The Genetic Algorithm Approach
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46. The Ultimate Speed Limit to Protein Folding Is Conformational Searching
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47. Exploring the relationships between protein sequence, structure and solubility
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48. Characteristic temperatures of folding of a small peptide
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49. Memory-induced acceleration and slowdown of barrier crossing
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50. Importance of Electrostatic Interactions in the Association of Intrinsically Disordered Histone Chaperone Chz1 and Histone H2A.Z-H2B
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51. Dimethyl sulfoxide induced structural transformations and non-monotonic concentration dependence of conformational fluctuation around active site of lysozyme
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52. First-passage time distribution and non-Markovian diffusion dynamics of protein folding
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53. One-state Downhill versus Conventional Protein Folding
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54. Improved design of stable and fast-folding model proteins
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55. Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins
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56. Global Optimization of Morse Clusters by Potential Energy Transformations
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57. Barriers in protein folding reactions
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58. Folding with downhill behavior and low cooperativity of proteins
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59. The nucleation-collapse mechanism in protein folding: evidence for the non-uniqueness of the folding nucleus
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60. Biological Networks Regulating Cell Fate Choice are Minimally Frustrated
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62. Tuning λ6–85 Towards Downhill Folding at its Melting Temperature
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63. Statistical mechanics‐based method to extract atomic distance‐dependent potentials from protein structures
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64. Unified understanding of folding and binding mechanisms of globular and intrinsically disordered proteins
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65. Scaling of Folding Properties in Simple Models of Proteins
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66. Thermal unfolding of an intermediate is associated with non-arrhenius kinetics in the folding of hen lysozyme
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69. Prediction of Native-State Hydrogen Exchange from Perfectly Funneled Energy Landscapes
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80. The relationship between sequence and structure in elementary folding units
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81. Modelling protein folding: the beauty and power of simplicity
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82. Kinetic and Structural Analysis of Submillisecond Folding Events in Cytochrome c
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83. Speeding protein folding beyond the Gō model: How a little frustration sometimes helps
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