The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain
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“Hence, major connections (>9 synapses, 99.7% with at least one synapse) and most minor connections with at least 3 synapses are maintained (83% with at least one synapse) 38,40.”
From FlyWire: online community for whole-brain connectomics (2022) · cites this paper as [38]
In the citing paper
“If omissions of synapses are statistically independent, then connections will be recalled with a probability that increases with the number of synapses involved 38.”
From FlyWire: online community for whole-brain connectomics (2022) · cites this paper as [38]
In the citing paper
“A fly neuron consists of a thicker, microtubule-rich “backbone” and numerous thin “twigs” 38 (Fig. 4a).”
From FlyWire: online community for whole-brain connectomics (2022) · cites this paper as [38]
Citations
Cites
Cardona, A., Saalfeld, S., Preibisch, S., Schmid, B., Cheng, A., Pulokas, J., Tomancak, P., & Hartenstein, V. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000502 · Cited by 372
Self-citation
Research works printed but not linked: 19
- Andres, B., Kroeger, T., Briggman, K.L., Denk, W., Korogod, N., Knott, G., Koethe, U., Hamprecht, F.A.: Globally Optimal Closed-surface Segmentation for Connectomics. In: Fitzgibbon, A., Lazebnik, S., Perona, P., Sato, Y., Schmid, C. (eds.) ECCV 2012, Part III. LNCS, vol. 7574, pp. 778–791. Springer, Heidelberg (2012) · DOI
- Becker, C., Ali, K., Knott, G., Fua, P.: Learning Context Cues for Synapse Segmentation in EM Volumes. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Part I. LNCS, vol. 7510, pp. 585–592. Springer, Heidelberg (2012) · DOI
- Funke, J., Andres, B., Hamprecht, F.A., Cardona, A., Cook, M.: Efficient automatic 3D-reconstruction of branching neurons from EM data. In: Proceedings of CVPR (2012) · DOI
- Funke, J., et al.: Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014, Part I. LNCS, vol. 8673, pp. 17–24. Springer, Heidelberg (2014) · DOI
- Helmstaedter, M., Mitra, P.P.: Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology 22(1), 162–169 (2012) · DOI
- Huang, G.B., Jain, V.: Deep and Wide Multiscale Recursive Networks for Robust Image Labeling. In: Proceedings of ICLR (2014)
- Jagadeesh, V., Anderson, J., Jones, B., Marc, R., Fisher, S., Manjunath, B.S.: Synapse Classification and Localization in Electron Micrographs. Pattern Recognition Letters (2013) · DOI
- Kaynig, V., Knowles-barley, S., Jones, T.R.: Large-Scale Automatic Reconstruction of Neuronal Processes from Electron Microscopy Images. arxiv:1303.7186v1 (2013) · arXiv
- Knott, G., Marchman, H., Wall, D., Lich, B.: Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling. The Journal of Neuroscience 28(12), 2959–2964 (2008) · DOI · Paper page
- Kreshuk, A., Köthe, U., Pax, E., Bock, D.D., Hamprecht, F.A.: Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks. PLoS One 9, 2 (2014) · DOI
- Kreshuk, A., Straehle, C.N., Sommer, C., Koethe, U., Cantoni, M., Knott, G., Hamprecht, F.A.: Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images. PloS One 6(10), e24899 (2011) · DOI
- Lichtman, J.W., Pfister, H., Shavit, N.: The big data challenges of connectomics. Nature Neuroscience 17(11), 1448–1454 (2014) · DOI
- Liu, T., Jones, C., Seyedhosseini, M., Tasdizen, T.: A modular hierarchical approach to 3D electron microscopy image segmentation. Journal of Neuroscience Methods 226, 88–102 (2014) · DOI
- Nunez-Iglesias, J., Kennedy, R., Parag, T., Shi, J., Chklovskii, D.B.: Machine Learning of Hierarchical Clustering to Segment 2D and 3D Images. PloS One 8(8), e71715 (2013) · DOI
- Plaza, S.M.: Focused Proofreading: Efficiently Extracting Connectomes from Segmented EM Images. arXiv:1409.1199v1 (2014) · arXiv
- Plaza, S.M., Parag, T., Huang, G.B., Olbris, D.J., Saunders, M.A., Rivlin, P.K.: Annotating Synapses in Large EM Datasets. arXiv:1409.1801v2 (2014) · arXiv
- Roncal, W.G., Kaynig-Fittkau, V., Kasthuri, N., Berger, D., Vogelstein, J.T., Fernandez, L.R., Lichtman, J.W., Vogelstein, R.J., Pfister, H., Hager, G.D.: Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation. arXiv:1403.3724 (2014) · arXiv
- Sommer, C., Straehle, C., Kothe, U., Hamprecht, F.A.: Ilastik: Interactive learning and segmentation toolkit. In: Proceedings of ISBI (2011) · DOI
- Vazquez-Reina, A., Gelbart, M., Huang, D., Lichtman, J., Miller, E., Pfister, H.: Segmentation fusion for connectomics. In: Proceedings of ICCV (2011) · DOI
Cited by
Sorted by citations
FlyWire: online community for whole-brain connectomics
Dorkenwald, S., McKellar, C. E., Macrina, T., Kemnitz, N., Lee, K., Lu, R., Wu, J., Popovych, S., Mitchell, E., Nehoran, B., et al. (2022) · Nature Methods · doi:10.1038/s41592-021-01330-0 · Cited by 289
Eckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2024) · Cell · doi:10.1016/j.cell.2024.03.016 · Cited by 277
Self-citationAutomatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set
Buhmann, J., Sheridan, A., Malin-Mayor, C., Schlegel, P., Gerhard, S., Kazimiers, T., Krause, R., Nguyen, T. M., Heinrich, L., Lee, W.-C. A., et al. (2021) · Nature Methods · doi:10.1038/s41592-021-01183-7 · Cited by 175
Self-citationEckstein, N., Bates, A. S., Champion, A., Du, M., Yin, Y., Schlegel, P., Lu, A. K.-Y., Rymer, T., Finley-May, S., Paterson, T., et al. (2020) · doi:10.1101/2020.06.12.148775 · Cited by 115
Self-citationHeinrich, L., Funke, J., Pape, C., Nunez-Iglesias, J., & Saalfeld, S. (2018) · Lecture Notes in Computer Science · doi:10.1007/978-3-030-00934-2_36 · Cited by 117
Self-citationAutomatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset
Buhmann, J., Sheridan, A., Gerhard, S., Krause, R., Nguyen, T., Heinrich, L., Schlegel, P., Lee, W.-C. A., Wilson, R., Saalfeld, S., et al. (2019) · doi:10.1101/2019.12.12.874172 · Cited by 21
Self-citation
Metadata
- Authors
- Kreshuk, A., Funke, J., Cardona, A., & Hamprecht, F. A.
- Venue
- Lecture Notes in Computer Science
- Publisher
- Springer International Publishing
- Published
- 2015
- Pages
- 661-668
- ISSN
- 0302-9743
- 1611-3349
- Cited by
- 19
- References
- 1
- Language
- en
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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