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Cited by 6Genomics and Phylogenetic StudiesAlgorithms and Data CompressionFractal and DNA sequence analysis

Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment

Medina-Medina, N., Broka, A., Lacey, S., Lin, H., Klings, E. S., Baldwin, C. T., Steinberg, M. H., Sebastiani, P.·2012·Advances in Intelligent and Soft Computing
DOI 10.1007/978-3-642-28839-5_23
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Integrity signals

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Crossref · 10.1007/978-3-642-28839-5_23

Cites

1 of 1 references verified0 citation errors · 0 not checkable

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  • Tools such as BOWTIE2 and BWA have been optimized for short reads, excelling in processing large volumes of data and pinpointing small-scale genetic variations with high accuracy.

    “Tools such as BOWTIE2 and BWA have been optimized for short reads, excelling in processing large volumes of data and pinpointing small-scale genetic variations with high accuracy [6].”

    From Whole-Genome Alignment: Methods, Challenges, and Future Directions (2024) · cites this paper as [6]

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Authors
Medina-Medina, N., Broka, A., Lacey, S., Lin, H., Klings, E. S., Baldwin, C. T., Steinberg, M. H., & Sebastiani, P.
Affiliations
  • Universidad de Granada (ES)
  • Boston University (US)
Corresponding author
Medina-Medina, N.
ORCID
Venue
Advances in Intelligent and Soft Computing
Publisher
Springer Berlin Heidelberg
Published
2012
Pages
197-207
ISSN
  • 1867-5662 (ISSN-L)
  • 1867-5670
DOI
10.1007/978-3-642-28839-5_23
OpenAlex
W51770674
Cited by
6
References
1
Citations by year
2024: 1 · 2017: 1 · 2015: 1 · 2014: 3
FWCI
2.19
Type
book chapter
Language
en
Open access
closed
Licence
www.springer.com/tdm (tdm)
Locations
Advances in intelligent and soft computing (publishedVersion)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Physical Sciences › Computer Science › Artificial Intelligence › Algorithms and Data Compression
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fractal and DNA sequence analysis
Keywords
Bowtie, BWA, eland, RNA-seq, short-read alignment, runtime performance, next-generation sequencing, process control

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