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The Membrane Protein Data Bank
Open accessAbstract
The Membrane Protein Data Bank (MPDB) is an online, searchable, relational database of structural and functional information on integral, anchored and peripheral membrane proteins and peptides. Data originates from the Protein Data Bank and other databases, and from the literature. Structures are based on X-ray and electron diffraction, nuclear magnetic resonance and cryoelectron microscopy. The MPDB is searchable online by protein characteristic, structure determination method, crystallization technique, detergent, temperature, pH, author, etc. Record entries are hyperlinked to the PDB and Pfam for viewing sequence, three-dimensional structure and domain architecture, and for downloading coordinates. Links to PubMed are also provided. The MPDB is updated weekly in parallel with the Protein Data Bank. Statistical analysis of MPDB records can be performed and viewed online. A summary of the statistics as applied to entries in the MPDB is presented. The data suggest conditions appropriate for crystallization trials with novel membrane proteins.
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Cited by
Normal Mode Analysis of Biomolecular Structures: Functional Mechanisms of Membrane Proteins
Bahar, I., Lezon, T. R., Bakan, A., & Shrivastava, I. H. (2010) · Chemical Reviews · doi:10.1021/cr900095e · Cited by 537
The in silico human surfaceome
Bausch-Fluck, D., Goldmann, U., Müller, S., van Oostrum, M., Müller, M., Schubert, O. T., & Wollscheid, B. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1808790115 · Cited by 369
Cardiolipin binding in bacterial respiratory complexes: Structural and functional implications
Arias-Cartin, R., Grimaldi, S., Arnoux, P., Guigliarelli, B., & Magalon, A. (2012) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2012.04.005 · Cited by 117
Metadata
- Authors
- Raman, P., Cherezov, V., & Caffrey, M.
- Venue
- Cellular and Molecular Life Sciences
- Published
- 2005-11-28
- Volume
- 63
- Issue
- 1
- Pages
- 36-51
- ISSN
- 1420-682X (ISSN-L)
- 1420-9071
- OpenAlex
- W2119130600
- Cited by
- 164
- References
- 0
- FWCI
- 8.06
- Type
- journal article
- Language
- en
- Open access
- hybrid
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